Actinoplanes digitatus (DSM 43149, ATCC 15349, CBS 191.64)

Name: Actinoplanes digitatus (DSM 43149, ATCC 15349, CBS 191.64)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7803

Type strain

Strain Designation UNCC 33

Culture col. no. DSM 43149 ATCC 15349 CBS 191.64 IFO 12512 KCC A-0060 16 more

NCBI tax ID(s) 1868

Special Collections DSMZ JCM KCTC JMRC

History DSMZ <- KCC <- CBS <- J.N. Couch, UNCC, 33 JCM <-- KCC A-0060 <-- CBS 191.64 <-- J. N. Couch UNCC 33.

Links

Actinoplanes digitatus UNCC 33 is a bacterium that was isolated from soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 39906

ATCC 15349,DSM 43149,IFO 12512,ATCC 31145,DSM 43867,IFO 14063,JCM 3264,JCM 3060,CCRC 12078,IMET 9245,NCIMB 10182,NRRL B-3345,VKM Ac-649,HUT 6551,KCTC 9594,CBS 191.64,KCTC 9258,NBRC 12512,NBRC 14063,BCRC 12078,BCRC 16346,CCRC 16346,NCIB 10182,CGMCC 4.2097

@ref 20215

Last LPSN update 2026-05-29 08:26:44

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Actinoplanes

Species Actinoplanes digitatus

Full scientific name Actinoplanes digitatus corrig. (Couch 1963) Stackebrandt and Kroppenstedt 1988

Synonyms (5)

Amorphoplanes digitatus
Amorphoplanes digitatis
"Ampullaria digitata"
Ampullariella digitata
Actinoplanes digitatis

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125439		90.787
125439		99.53	positive

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
10819	CZAPEK PEPTONE AGAR (DSMZ Medium 83)	Medium recipe at MediaDive	Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water
10819	N-Z-AMINE-MEDIUM (DSMZ Medium 554)	Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
10819	CZAPEK-DOX AGAR (DSMZ Medium 130)	Medium recipe at MediaDive	Name: CZAPEK-DOX AGAR (DSMZ Medium 130) Composition: Sucrose 30.0 g/l Agar 13.0 g/l NaNO3 3.0 g/l K2HPO4 1.0 g/l KCl 0.5 g/l MgSO4 x 7 H2O 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
10819	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.661

Observation

67770

Observationquinones: MK-9(H₄), MK-9(H₆)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
10819	soil
67770	Soil	Sheboygan, MI	USA	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10819	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1420533v1 assembly for Actinoplanes digitatis DSM 43149	contig	GCA_014205335	1868.3	2873451178	1868	72.51
124043	ASM4266096v1 assembly for Actinoplanes digitatis JCM 3060	contig	GCA_042660965			1868	59.79
124043	ASM4242878v1 assembly for Actinoplanes digitatis JCM 3060	scaffold	GCA_042428785			1868	45.31
66792	ASM1686215v1 assembly for Actinoplanes digitatis NBRC 12512	contig	GCA_016862155	1868.4	8110451384	1868	44.62

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
67770	Actinoplanes digitatis gene for 16S rRNA, partial sequence	AB037000	1471	1868
67770	Actinoplanes digitatis gene for 16S ribosomal RNA, partial sequence	AB048213	1439	1868
67770	Actinoplanes digitatis partial 16S rRNA gene, strain IMSNU 22123T	AJ277567	1507	1868
124043	Actinoplanes digitatis strain JCM 3060 16S ribosomal RNA gene, partial sequence.	MT760394	1321	1868

GC content

67770

GC-content (mol%)72.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1420533v1 assembly for Actinoplanes digitatis DSM 43149
NCBI: GCA_014205335

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.66	no
125439	gram_stain	BacteriaNetⓘ	positive	99.53	no
125439	motility	BacteriaNetⓘ	no	90.79	no
125439	spore_formation	BacteriaNetⓘ	yes	79.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinoplanes digitatis strain DSM 43149
PATRIC: 1868.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.27	no
125438	anaerobic	anaerobicⓘ	no	93.00	no
125438	spore-forming	spore-formingⓘ	yes	84.14	no
125438	aerobic	aerobicⓘ	yes	87.21	no
125438	thermophilic	thermophileⓘ	no	93.50	no
125438	flagellated	motile2+ⓘ	no	61.85	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Diversity of Culturable Bacteria Isolated from Highland Barley Cultivation Soil in Qamdo, Tibet Autonomous Region.	Pan HU, Zhou J, Dawa Z, Dai Y, Zhang Y, Yang H, Wang C, Liu H, Zhou H, Lu X, Tian Y.	Pol J Microbiol	10.33073/pjm-2021-008	2021
	Unveiling the molecular basis of selective fluorination of SAM-dependent fluorinases.	Verma RK, Yeo WL, Tiong E, Ang EL, Lim YH, Wong FT, Fan H.	Chem Sci	10.1039/d5sc00081e	2025
Metabolism	Cell Wall Glycopolymers of Type Strains from Three Species of the Genus Actinoplanes.	Streshinskaya GM, Sashkov AS, Tul'skaya EM, Senchenkova SN, Dmitrenok AS, Piskunkova NF, Bueva OV, Evtushenko LI	Biochemistry (Mosc)	10.1134/S0006297916090091	2016
Phylogeny	Actinoplanes sediminis sp. nov., isolated from marine sediment.	Qu Z, Bao XD, Xie QY, Zhao YX, Yan B, Dai HF, Chen HQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002451	2017

References

#10819	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43149
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinoplanes digitatus (DSM 43149, ATCC 15349, CBS 191.64)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014205335

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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