Name: Actinoplanes digitatis UNCC 33
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7803

Type strain:

Species: Actinoplanes digitatis

Strain Designation: UNCC 33

Culture col. no.: DSM 43149, ATCC 15349, CBS 191.64, IFO 12512, KCC A-0060, NBRC 12512, JCM 3060, BCRC 12078, CGMCC 4.2097, IFM 0125, IMET 9245, IMSNU 22123, KCTC 9258, NCIMB 10182, NRRL B-3345, RIA 820, VKM Ac-649

Strain history: KCC A-0060 <-- CBS 191.64 <-- J. N. Couch UNCC 33.

NCBI tax ID(s): 1868 (species)

SI-ID 39906

ATCC 15349, DSM 43149, IFO 12512, ATCC 31145, DSM 43867, IFO 14063, JCM 3264, JCM 3060, CCRC 12078, IMET 9245, NCIMB 10182, NRRL B-3345, VKM Ac-649, HUT 6551, KCTC 9594, CBS 191.64, KCTC 9258, NBRC 12512, NBRC 14063, BCRC 12078, BCRC 16346, CCRC 16346, NCIB 10182, CGMCC 4.2097

Special Collections

Other strains from Actinoplanes digitatis

Section

Actinoplanes digitatis UNCC 33 is a spore-forming bacterium that was isolated from soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Actinoplanes*
	Species	**Actinoplanes digitatis**
	Full Scientific Name (LPSN)	Actinoplanes digitatis (Couch 1963) Stackebrandt and Kroppenstedt 1988

	Synonym	Ampullariella digitata
	Synonym	"Ampullaria* digitata"*

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10819]

Culture medium

CZAPEK PEPTONE AGAR (DSMZ Medium 83)

[Ref.: #10819]

Culture medium growth

[Ref.: #10819]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10819]

Culture medium composition

expand / minimize

[Ref.: #10819]

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #10819]

Culture medium growth

[Ref.: #10819]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10819]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #10819]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %97

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(H₆)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10819]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Sheboygan, MI
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10819]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinoplanes digitatis gene for 16S ribosomal RNA, partial sequence	AB048213	1439	GenBank ENA	1868 tax ID
[Ref.: #67770]	Actinoplanes digitatis partial 16S rRNA gene, strain IMSNU 22123T	AJ277567	1507	GenBank ENA	1868 tax ID
[Ref.: #67770]	Actinoplanes digitatis gene for 16S rRNA, partial sequence	AB037000	1471	GenBank ENA	1868 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Actinoplanes digitatis NBRC 12512	GCA_016862155	contig	GenBank ENA	1868 tax ID	*
[Ref.: #66792]	Actinoplanes digitatis DSM 43149	GCA_014205335	contig	GenBank ENA	1868 tax ID	*
[Ref.: #66792]	Actinoplanes digitatis strain DSM 43149	1868.3	wgs	PATRIC	1868 tax ID	*
[Ref.: #66792]	Actinoplanes digitatis strain NBRC 12512	1868.4	wgs	PATRIC	1868 tax ID	*
[Ref.: #66792]	Actinoplanes digitatis DSM 43149 Improved Assembly	2873451178	draft	JGI IMG/M	1868 tax ID	*

[Ref.: #67770]

GC-content

72.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinoplanes digitatis strain NBRC 12512 PATRIC: 1868.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	97	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinoplanes digitatis strain DSM 43149 PATRIC: 1868.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	87.267	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.002	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	84.14	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.207	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	61.854	no

Availability in culture collections External links

[Ref.: #10819]

Culture collection no.

DSM 43149, ATCC 15349, CBS 191.64, IFO 12512, KCC A-0060, NBRC 12512, JCM 3060, BCRC 12078, CGMCC 4.2097, IFM 0125, IMET 9245, IMSNU 22123, KCTC 9258, NCIMB 10182, NRRL B-3345, RIA 820, VKM Ac-649

[Ref.: #77245]

SI-ID 39906

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinoplanes sediminis sp. nov., isolated from marine sediment.	Qu Z, Bao XD, Xie QY, Zhao YX, Yan B, Dai HF, Chen HQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002451	2017	*
Metabolism	Cell Wall Glycopolymers of Type Strains from Three Species of the Genus Actinoplanes.	Streshinskaya GM, Sashkov AS, Tul'skaya EM, Senchenkova SN, Dmitrenok AS, Piskunkova NF, Bueva OV, Evtushenko LI	Biochemistry (Mosc)	10.1134/S0006297916090091	2016	*

References

#10819

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43149

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77245

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID39906.1 )

* These data were automatically processed and therefore are not curated

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Actinoplanes digitatis strain NBRC 12512

Actinoplanes digitatis strain DSM 43149

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