Actinoplanes deccanensis (DSM 43806, ATCC 21983, JCM 3247)

Name: Actinoplanes deccanensis (DSM 43806, ATCC 21983, JCM 3247)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7802

Type strain

Strain Designation A/10655, MB-T 21

Culture col. no. DSM 43806 ATCC 21983 JCM 3247 KCC A-0247 A/10655 15 more

NCBI tax ID(s) 113561

Special Collections DSMZ JCM KCTC Wink compendium JMRC

History DSMZ <- G. Vobis, MB-T 21 <- Gruppo Lepetit S.p.A., A/10655 (Actinoplanes sp.) JCM <-- KCC A-0247 <-- SANK 61978 <-- ATCC 21983 <-- Lepetit A/10655.

Links

Actinoplanes deccanensis A/10655 is a spore-forming bacterium that produces antibiotic compounds and was isolated from Soil.

antibiotic compound production spore-forming genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 88612

MTCC 711,ATCC 21983,DSM 43806,JCM 3247,CCRC 12107,IFO 13994,IMET 9256,NCIMB 12643,NRRL B-16715,CBS 597.74,KCTC 9532,NBRC 13994,BCRC 12107,CGMCC 4.2098

@ref 20215

Last LPSN update 2026-05-29 08:26:44

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Actinoplanes

Species Actinoplanes deccanensis

Full scientific name Actinoplanes deccanensis Parenti et al. 1975 (Approved Lists 1980)

Synonyms (1)

Paractinoplanes deccanensis

BacDive ID	Other strains from **Actinoplanes deccanensis** (4)	Type strain
100075	A. deccanensis STI09053(IMET), 1028-003,
100076	A. deccanensis STI09054(IMET), 1028-004,
100077	A. deccanensis STI09055(IMET), 1028-005,
100078	A. deccanensis STI09057(IMET), 1029-025,

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125439		92.156
125439		99.436	positive

Colony morphology

@ref	Colony color	Incubation period	Medium used
19591	Dahlia yellow	10-14 days	ISP 2
19591	Pastel yellow	10-14 days	ISP 3
19591	Pastel yellow	10-14 days	ISP 4
19591	Pastel yellow	10-14 days	ISP 5
19591	Pastel yellow	10-14 days	ISP 6
19591	Pastel yellow	10-14 days	ISP 7

Multicellular morphology

@ref	Forms multicellular complex	Medium name
19591		ISP 2
19591		ISP 3
19591		ISP 4
19591		ISP 5
19591		ISP 6
19591		ISP 7

Multimedia

@ref:	11259
multimedia content:	DSM_43806-1.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_43806-1.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	11259
multimedia content:	DSM_43806.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_43806.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11259	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
19591	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19591	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19591	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19591	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19591	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19591	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
11259	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
11259	positive	growth	28
19591	positive	optimum	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.647

Spore formation

@ref	Spore description	Type of spore	Spore formation
19591	Formation of sporangia, spore surface smooth	spore

Compound production

@ref	Compound
11259	lipiarmycin
20216	Lipiarmycin
19591	Lipiarmycin A
19591	Azaserine

Halophily

@ref	Salt	Growth	Tested relation	Concentration
19591	NaCl	positive	maximum	2.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
67770	68590 ChEBI	fidaxomicin
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	+	3.2.1.23	from API zym
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	+	3.2.1.31	from API zym
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68368	gelatinase	+		from API 20E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68382	trypsin	+	3.4.21.4	from API zym
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	-		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
19591	-	-	-	-	+	-	-	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
19591	not determinedn.d.	+	+	+	-	+	-	-	+	+	+	+	+	+	+	+	+	+	+	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Soil	Decca	India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB036998 (>99% sequence identity) for Actinoplanes from Microbeatlas

Aquatic Samples	4
Soil Samples	33
Animal Samples	3
Plant Samples	6
Total Samples	46

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19591	1	Risk group (German classification) According to TRBA 466
11259	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1686211v1 assembly for Paractinoplanes deccanensis NBRC 13994	contig	GCA_016862115	113561.33	3002605511	113561	23.15

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Actinoplanes deccanensis gene for 16S rRNA, partial sequence	AB036998	1477	113561
20218	Actinoplanes deccanensis partial 16S rRNA gene, strain IMSNU 20026T	AJ277565	1452	113561
124043	Actinoplanes deccanensis strain JCM 3247 16S ribosomal RNA gene, partial sequence.	MT760428	1190	113561

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1686211v1 assembly for Paractinoplanes deccanensis NBRC 13994
NCBI: GCA_016862115

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.65	no
125439	gram_stain	BacteriaNetⓘ	positive	99.44	no
125439	motility	BacteriaNetⓘ	no	92.16	no
125439	spore_formation	BacteriaNetⓘ	yes	88.15	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinoplanes deccanensis strain NBRC 13994
PATRIC: 113561.33

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.95	no
125438	anaerobic	anaerobicⓘ	no	93.36	no
125438	spore-forming	spore-formingⓘ	yes	87.45	no
125438	aerobic	aerobicⓘ	yes	87.14	no
125438	thermophilic	thermophileⓘ	no	95.75	no
125438	flagellated	motile2+ⓘ	no	59.33	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Final Demonstration of the Co-Identity of Lipiarmycin A3 and Tiacumicin B (Fidaxomicin) through Single Crystal X-ray Analysis.	Serra S, Malpezzi L, Bedeschi A, Fuganti C, Fonte P.	Antibiotics (Basel)	10.3390/antibiotics6010007	2017
Pathogenicity	Structural Basis of Transcription Inhibition by Fidaxomicin (Lipiarmycin A3).	Lin W, Das K, Degen D, Mazumder A, Duchi D, Wang D, Ebright YW, Ebright RY, Sineva E, Gigliotti M, Srivastava A, Mandal S, Jiang Y, Liu Y, Yin R, Zhang Z, Eng ET, Thomas D, Donadio S, Zhang H, Zhang C, Kapanidis AN, Ebright RH.	Mol Cell	10.1016/j.molcel.2018.02.026	2018
	Improving fidaxomicin production through ARTP mutagenesis and fermentation optimization in Actinoplanes deccanensis.	Ruan JY, Xie H, Zheng YL, Zhao QW, Chen XA, Lyu ZY, Li YQ.	Synth Syst Biotechnol	10.1016/j.synbio.2025.06.002	2025
Genetics	Stepwise increase of fidaxomicin in an engineered heterologous host Streptomyces albus through multi-level metabolic engineering.	Xie H, Su YT, Bu QT, Li YP, Zhao QW, Du YL, Li YQ.	Synth Syst Biotechnol	10.1016/j.synbio.2024.06.004	2024
Transcriptome	Transcriptional regulation of the fidaxomicin gene cluster and cellular development in Actinoplanes deccanensis YP-1 by the pleiotropic regulator MtrA.	Xie H, Ruan J-Y, Bu Q-T, Li Y-P, Su Y-T, Zhao Q-W, Du Y-L, Li Y-Q.	Microbiol Spectr	10.1128/spectrum.02702-23	2023
	Genome-based rational engineering of Actinoplanes deccanensis for improving fidaxomicin production and genetic stability.	Li YP, Bu QT, Li JF, Xie H, Su YT, Du YL, Li YQ.	Bioresour Technol	10.1016/j.biortech.2021.124982	2021
	Polyamine-producing actinobacteria enhance biomass production and seed yield in Salicornia bigelovii	El-Tarabily KA, ElBaghdady KZ, AlKhajeh AS, Ayyash MM, Aljneibi RS, El-Keblawy A, AbuQamar SF.	Biol Fertil Soils	10.1007/s00374-020-01450-3	2020
	The Co-identity of Lipiarmycin A3 and Tiacumicin B.	Bedeschi A, Fonte P, Fronza G, Fuganti C, Serra S.	Nat Prod Commun	10.1177/1934578x1400900227	2016
	Comparison of fidaxomicin, thuricin CD, vancomycin and nisin highlights the narrow spectrum nature of thuricin CD.	Walsh L, Lavelle A, O'Connor PM, Hill C, Ross RP.	Gut Microbes	10.1080/19490976.2024.2342583	2024
	Salicornia bigelovii, S. brachiata and S. herbacea: Their Nutritional Characteristics and an Evaluation of Their Potential as Salt Substitutes.	Alfheeaid HA, Raheem D, Ahmed F, Alhodieb FS, Alsharari ZD, Alhaji JH, BinMowyna MN, Saraiva A, Raposo A.	Foods	10.3390/foods11213402	2022
	Enhancing tylosin production by combinatorial overexpression of efflux, SAM biosynthesis, and regulatory genes in hyperproducing Streptomyces xinghaiensis strain.	Dai P, Qin Y, Li L, Li H, Lv L, Xu D, Song Y, Huang T, Lin S, Deng Z, Tao M.	Synth Syst Biotechnol	10.1016/j.synbio.2023.07.002	2023
Enzymology	Fidaxomicin for the treatment of Clostridioides difficile in children.	Skinner AM, Scardina T, Kociolek LK.	Future Microbiol	10.2217/fmb-2020-0104	2020
Transcriptome	Multi-omics Comparative Analysis of Streptomyces Mutants Obtained by Iterative Atmosphere and Room-Temperature Plasma Mutagenesis.	Liu T, Huang Z, Gui X, Xiang W, Jin Y, Chen J, Zhao J.	Front Microbiol	10.3389/fmicb.2020.630309	2020
	Halotolerant Marine Rhizosphere-Competent Actinobacteria Promote Salicornia bigelovii Growth and Seed Production Using Seawater Irrigation.	Mathew BT, Torky Y, Amin A, Mourad AI, Ayyash MM, El-Keblawy A, Hilal-Alnaqbi A, AbuQamar SF, El-Tarabily KA.	Front Microbiol	10.3389/fmicb.2020.00552	2020
	Substrate Specificity of Acyltransferase Domains for Efficient Transfer of Acyl Groups.	Shen JJ, Chen F, Wang XX, Liu XF, Chen XA, Mao XM, Li YQ.	Front Microbiol	10.3389/fmicb.2018.01840	2018
Metabolism	Lipiarmycin, a new antibiotic from Actinoplanes. I. Description of the producer strain and fermentation studies.	Parenti F, Pagani H, Beretta G.	J Antibiot (Tokyo)	10.7164/antibiotics.28.247	1975
	Lipiarmycin, a new antibiotic from Actinoplanes. II. Isolation, chemical, biological and biochemical characterization.	Coronelli C, White RJ, Lancini GC, Parenti F.	J Antibiot (Tokyo)	10.7164/antibiotics.28.253	1975
Pathogenicity	New target for inhibition of bacterial RNA polymerase: 'switch region'.	Srivastava A, Talaue M, Liu S, Degen D, Ebright RY, Sineva E, Chakraborty A, Druzhinin SY, Chatterjee S, Mukhopadhyay J, Ebright YW, Zozula A, Shen J, Sengupta S, Niedfeldt RR, Xin C, Kaneko T, Irschik H, Jansen R, Donadio S, Connell N, Ebright RH.	Curr Opin Microbiol	10.1016/j.mib.2011.07.030	2011
Pathogenicity	The transcription inhibitor lipiarmycin blocks DNA fitting into the RNA polymerase catalytic site.	Tupin A, Gualtieri M, Leonetti JP, Brodolin K.	EMBO J	10.1038/emboj.2010.135	2010
Metabolism	GE23077 binds to the RNA polymerase 'i' and 'i+1' sites and prevents the binding of initiating nucleotides.	Zhang Y, Degen D, Ho MX, Sineva E, Ebright KY, Ebright YW, Mekler V, Vahedian-Movahed H, Feng Y, Yin R, Tuske S, Irschik H, Jansen R, Maffioli S, Donadio S, Arnold E, Ebright RH.	Elife	10.7554/elife.02450	2014
Enzymology	Structure and biological activity of lipiarmycin B.	Cavalleri B, Arnone A, Di Modugno E, Nasini G, Goldstein BP	J Antibiot (Tokyo)	10.7164/antibiotics.41.308	1988
Phylogeny	Actinoplanes toevensis sp. nov. and Actinoplanes tereljensis sp. nov., isolated from Mongolian soil.	Ara I, Yamamura H, Tsetseg B, Daram D, Ando K.	Int J Syst Evol Microbiol	10.1099/ijs.0.009944-0	2010
Phylogeny	Actinoplanes sediminis sp. nov., isolated from marine sediment.	Qu Z, Bao XD, Xie QY, Zhao YX, Yan B, Dai HF, Chen HQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002451	2017
Phylogeny	Classification of Actinoplanes sp. ATCC 33076, an actinomycete that produces the glycolipodepsipeptide antibiotic ramoplanin, as Actinoplanes ramoplaninifer sp. nov.	Marcone GL, Binda E, Reguzzoni M, Gastaldo L, Dalmastri C, Marinelli F	Int J Syst Evol Microbiol	10.1099/ijsem.0.002281	2017
Phylogeny	Actinoplanes atraurantiacus sp. nov., isolated from soil.	Zhang Y, Zhang J, Fan L, Pang H, Xin Y, Zhang X	Int J Syst Evol Microbiol	10.1099/ijs.0.037226-0	2011
Phylogeny	Actinoplanes abujensis sp. nov., isolated from Nigerian arid soil.	Sazak A, Sahin N, Camas M	Int J Syst Evol Microbiol	10.1099/ijs.0.031872-0	2011

References

#11259	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43806
#19591	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinoplanes deccanensis (DSM 43806, ATCC 21983, JCM 3247)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

API zym

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016862115

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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