Name: Citricoccus muralis 4-O
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7631

Type strain:

Species: Citricoccus muralis

Strain Designation: 4-O, 4-0

Culture col. no.: DSM 14442, CCM 4981, NBRC 106156, CCUG 51768, JCM 12134, CIP 107799, DSM 11442

Strain history: CIP <- 2003, CCM <- H.J. Busse: strain 4-0 <- P. Altenburger

NCBI tax ID(s): 169134 (species)

SI-ID 100598

CCM 4981, DSM 14442, JCM 12134, CIP 107799, DSM 11442, CCUG 51768

Special Collections

Section

When using BacDive for research please cite our paper

Citricoccus muralis 4-O is an aerobe, mesophilic, Gram-positive bacterium that was isolated from medieval wall painting.

coccus-shaped
Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Citricoccus*
	Species	**Citricoccus muralis**
	Full Scientific Name (LPSN)	Citricoccus muralis Altenburger et al. 2002

Information on morphological and physiological properties Morphology

[Ref.: #121188]	Gram stain	positive
[Ref.: #125438]	Gram stain	positive Confidence in %93.167

[Ref.: #121188]	Cell shape	coccus-shaped

[Ref.: #121188]	Motility	no

[Ref.: #18382]	Colony color	Lemon yellow (1012)
[Ref.: #18382]	Incubation period	10-14 days
[Ref.: #18382]	Cultivation medium used	ISP 2

[Ref.: #18382]	Colony color	Lemon yellow (1012)
[Ref.: #18382]	Incubation period	10-14 days
[Ref.: #18382]	Cultivation medium used	ISP 3

[Ref.: #18382]	Colony color	Lemon yellow (1012)
[Ref.: #18382]	Incubation period	10-14 days
[Ref.: #18382]	Cultivation medium used	ISP 4

[Ref.: #18382]	Colony color	Lemon yellow (1012)
[Ref.: #18382]	Incubation period	10-14 days
[Ref.: #18382]	Cultivation medium used	ISP 5

[Ref.: #18382]	Colony color	Lemon yellow (1012)
[Ref.: #18382]	Incubation period	10-14 days
[Ref.: #18382]	Cultivation medium used	ISP 6

[Ref.: #18382]	Colony color	Lemon yellow (1012)
[Ref.: #18382]	Incubation period	10-14 days
[Ref.: #18382]	Cultivation medium used	ISP 7

[Ref.: #18382]	Multicellular complex forming ability	no
[Ref.: #18382]	Medium Name (multicellularity)	ISP 2

[Ref.: #18382]	Multicellular complex forming ability	no
[Ref.: #18382]	Medium Name (multicellularity)	ISP 3

[Ref.: #18382]	Multicellular complex forming ability	no
[Ref.: #18382]	Medium Name (multicellularity)	ISP 4

[Ref.: #18382]	Multicellular complex forming ability	no
[Ref.: #18382]	Medium Name (multicellularity)	ISP 5

[Ref.: #18382]	Multicellular complex forming ability	no
[Ref.: #18382]	Medium Name (multicellularity)	ISP 6

[Ref.: #18382]	Multicellular complex forming ability	no
[Ref.: #18382]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5356]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #5356]

Culture medium growth

[Ref.: #5356]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5356]

Culture medium composition

expand / minimize

[Ref.: #18382]

Culture medium

ISP 2

[Ref.: #18382]

Culture medium growth

[Ref.: #18382]

Culture medium composition

expand / minimize

[Ref.: #18382]

Culture medium

ISP 3

[Ref.: #18382]

Culture medium growth

[Ref.: #18382]

Culture medium composition

expand / minimize

[Ref.: #18382]

Culture medium

ISP 4

[Ref.: #18382]

Culture medium growth

[Ref.: #18382]

Culture medium composition

expand / minimize

[Ref.: #18382]

Culture medium

ISP 5

[Ref.: #18382]

Culture medium growth

[Ref.: #18382]

Culture medium composition

expand / minimize

[Ref.: #18382]

Culture medium

ISP 6

[Ref.: #18382]

Culture medium growth

[Ref.: #18382]

Culture medium composition

expand / minimize

[Ref.: #18382]

Culture medium

ISP 7

[Ref.: #18382]

Culture medium growth

[Ref.: #18382]

Culture medium composition

expand / minimize

[Ref.: #39944]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #39944]

Culture medium growth

[Ref.: #39944]

Culture medium composition

expand / minimize

[Ref.: #121188]

Culture medium

CIP Medium 72

[Ref.: #121188]

Culture medium growth

[Ref.: #121188]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5356]		growth	28 °C
[Ref.: #39944]		growth	30 °C
[Ref.: #59306]		growth	26-30 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #121188]		growth	10-30 °C
[Ref.: #121188]	negative	growth	37 °C
[Ref.: #121188]	negative	growth	41 °C
[Ref.: #121188]	negative	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #59306]	Oxygen tolerance	aerobe
[Ref.: #121188]	Oxygen tolerance	obligate aerobe

[Ref.: #5356]	Murein short key	A11.40
[Ref.: #5356]	Murein types	A4alpha L-Lys-Gly-D-Glu

[Ref.: #67770]

Observation

quinones: MK-9(H₂), MK-7(H₂), MK-8(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18382]	arabinose ChEBI	-
[Ref.: #18382]	cellulose ChEBI	-
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #18382]	fructose ChEBI	-
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #18382]	glucose ChEBI	+
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #121188]	hippurate ChEBI	+	hydrolysis
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #18382]	mannitol ChEBI	-
[Ref.: #18382]	myo-inositol ChEBI	-
[Ref.: #121188]	nitrate ChEBI	-	reduction
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #121188]	nitrite ChEBI	-	reduction
[Ref.: #18382]	raffinose ChEBI	-
[Ref.: #18382]	rhamnose ChEBI	-
[Ref.: #18382]	sucrose ChEBI	+
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #18382]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #121188]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #121188]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #121188]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #121188]	amylase	+
[Ref.: #121188]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #121188]	caseinase	-	3.4.21.50
[Ref.: #121188]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #121188]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #121188]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #121188]	gelatinase	+/-
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #121188]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #121188]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121188]	oxidase	-
[Ref.: #121188]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68379]	pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #121188]	tween esterase	+
[Ref.: #121188]	urease	-	3.5.1.5
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #121188]	2441	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	+	-	-	+	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	+	+	+	+	-	-	+	+	+	-	+

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18382]	69	-	+	+	+	-	-	+	-	-	+	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18382]	92	not determinedn.d.	+	+	+	-	+	-	-	+	-	+	-	-	-	-	+	-	-	-	-
[Ref.: #121188]	10658	-	-	+	-	-	+	+	-	+	-	-	+	-	-	-	-	-	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	gallate degradation	100	5 of 5
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	cyanate degradation	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	aerobactin biosynthesis	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	pentose phosphate pathway	90.91	10 of 11
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	flavin biosynthesis	86.67	13 of 15
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	citric acid cycle	85.71	12 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	vitamin K metabolism	80	4 of 5
[Ref.: #66794]	phenol degradation	80	16 of 20
[Ref.: #66794]	creatinine degradation	80	4 of 5
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	3-chlorocatechol degradation	80	4 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	80	8 of 10
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	glutamate and glutamine metabolism	78.57	22 of 28
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	77.78	7 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	urea cycle	76.92	10 of 13
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	cyclohexanol degradation	75	3 of 4
[Ref.: #66794]	purine metabolism	73.4	69 of 94
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	alanine metabolism	68.97	20 of 29
[Ref.: #66794]	pyrimidine metabolism	68.89	31 of 45
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	oxidative phosphorylation	65.93	60 of 91
[Ref.: #66794]	isoprenoid biosynthesis	65.38	17 of 26
[Ref.: #66794]	lipid metabolism	64.52	20 of 31
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	proline metabolism	63.64	7 of 11
[Ref.: #66794]	non-pathway related	63.16	24 of 38
[Ref.: #66794]	tryptophan metabolism	63.16	24 of 38
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	62.5	5 of 8
[Ref.: #66794]	histidine metabolism	62.07	18 of 29
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	myo-inositol biosynthesis	60	6 of 10
[Ref.: #66794]	propionate fermentation	60	6 of 10
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	tyrosine metabolism	57.14	8 of 14
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	glutathione metabolism	57.14	8 of 14
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	degradation of sugar alcohols	56.25	9 of 16
[Ref.: #66794]	lysine metabolism	54.76	23 of 42
[Ref.: #66794]	3-phenylpropionate degradation	53.33	8 of 15
[Ref.: #66794]	Entner Doudoroff pathway	50	5 of 10
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	suberin monomers biosynthesis	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	androgen and estrogen metabolism	50	8 of 16
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	phenylpropanoid biosynthesis	46.15	6 of 13
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	methionine metabolism	42.31	11 of 26
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	sulfate reduction	38.46	5 of 13
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	arachidonic acid metabolism	33.33	6 of 18
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	33.33	2 of 6
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	degradation of sugar acids	32	8 of 25
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	29.41	5 of 17
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	degradation of pentoses	28.57	8 of 28
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	degradation of hexoses	27.78	5 of 18
[Ref.: #66794]	carotenoid biosynthesis	27.27	6 of 22
[Ref.: #66794]	ascorbate metabolism	27.27	6 of 22
[Ref.: #66794]	polyamine pathway	26.09	6 of 23
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	methanogenesis from CO2	25	3 of 12
[Ref.: #66794]	allantoin degradation	22.22	2 of 9
[Ref.: #66794]	daunorubicin biosynthesis	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5356]	Sample type/isolated from	medieval wall painting
[Ref.: #5356]	Geographic location (country and/or sea, region)	St. Georgen ob Judenburg
[Ref.: #5356]	Country	Austria
[Ref.: #5356]	Country ISO 3 Code	AUT
[Ref.: #5356]	Continent	Europe

[Ref.: #59306]	Sample type/isolated from	Medieval wall painting
[Ref.: #59306]	Geographic location (country and/or sea, region)	Styria,St.Georgen ob Judenburg
[Ref.: #59306]	Country	Austria
[Ref.: #59306]	Country ISO 3 Code	AUT
[Ref.: #59306]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Medieval wall painting in the church of St. Georgen
[Ref.: #67770]	Geographic location (country and/or sea, region)	Styria
[Ref.: #67770]	Country	Austria
[Ref.: #67770]	Country ISO 3 Code	AUT
[Ref.: #67770]	Continent	Europe

[Ref.: #121188]	Sample type/isolated from	Medieval wall painting church
[Ref.: #121188]	Country	Austria
[Ref.: #121188]	Country ISO 3 Code	AUT
[Ref.: #121188]	Continent	Europe
[Ref.: #121188]	Isolation date	1993
* marker position based on {}

Isolation sources categories

#Engineered	#Other	#Painting
#Engineered	#Built environment	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ344143 (>99% sequence identity) for Micrococcus from Microbeatlas

Aquatic Samples	2
Soil Samples	11
Animal Samples	13
Plant Samples	1
Total Samples	27

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5356]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #18382]	Biosafety level	1
[Ref.: #121188]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5356]	Citrococcus muralis 16S rRNA gene, strain 4-0	AJ344143	1455	GenBank ENA	169134 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Citricoccus muralis DSM 14442	GCA_003386075	contig	GenBank ENA	169134 tax ID
[Ref.: #66792]	Citricoccus muralis strain DSM 14442	169134.3	wgs	PATRIC	169134 tax ID	*
[Ref.: #66792]	Citricoccus muralis DSM 14442	2773857773	draft	JGI IMG/M	169134 tax ID	*

[Ref.: #5356]

GC-content

68 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Citricoccus muralis strain DSM 14442 PATRIC: 169134.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	93.167	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	98.005	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	74.036	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	85.074	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	94.5	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	88.5	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Citricoccus muralis DSM 14442 NCBI: GCA_003386075
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	87.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	61.6
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	87.9
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	66

Availability in culture collections External links

[Ref.: #5356]

Culture collection no.

DSM 14442, CCM 4981, NBRC 106156, CCUG 51768, JCM 12134, CIP 107799, DSM 11442

[Ref.: #77075]

SI-ID 100598

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Citricoccus zhacaiensis sp. nov., isolated from a bioreactor for saline wastewater treatment.	Meng FX, Yang XC, Yu PS, Pan JM, Wang CS, Xu XW, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.011635-0	2009	*
Phylogeny	Citricoccus parietis sp. nov., isolated from a mould-colonized wall and emended description of Citricoccus alkalitolerans Li et al. 2005.	Schafer J, Martin K, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.012567-0	2009	*
Phylogeny	Citricoccus alkalitolerans sp. nov., a novel actinobacterium isolated from a desert soil in Egypt.	Li WJ, Chen HH, Zhang YQ, Kim CJ, Park DJ, Lee JC, Xu LH, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.63237-0	2005	*
Phylogeny	Citricoccus muralis gen. nov., sp. nov., a novel actinobacterium isolated from a medieval wall painting.	Altenburger P, Kampfer P, Schumann P, Steiner R, Lubitz W, Busse HJ	Int J Syst Evol Microbiol	10.1099/00207713-52-6-2095	2002	*

References

#5356

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14442

#18382

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#39944 ; Curators of the CIP;
#59306 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 51768

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#77075

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100598.1 )

#121188 Collection of Institut Pasteur ; Curators of the CIP; CIP 107799

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Citricoccus muralis strain DSM 14442

Citricoccus muralis DSM 14442

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