Name: Arthrobacter psychrochitiniphilus GP3
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7623

Type strain:

Species: Arthrobacter psychrochitiniphilus

Strain Designation: GP3

Culture col. no.: DSM 23143, CGMCC 1.6355, JCM 13874

Strain history: F. Wang GP3.

NCBI tax ID(s): 291045 (species)

SI-ID 312284

CGMCC 1.6355, JCM 13874, DSM 23143

Special Collections

Section

Arthrobacter psychrochitiniphilus GP3 is an aerobe, Gram-positive, motile bacterium that was isolated from guano of Adélie penguins.

Gram-positive
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Arthrobacter*
	Species	**Arthrobacter psychrochitiniphilus**
	Full Scientific Name (LPSN)	Arthrobacter psychrochitiniphilus Wang et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29225]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %93.632

[Ref.: #29225]	Cell shape	rod-shaped

[Ref.: #29225]	Motility	yes
[Ref.: #69480]	Motility	no Confidence in %93.5

[Ref.: #18351]	Colony color	Sulfur yellow (1016)
[Ref.: #18351]	Incubation period	10-14 days
[Ref.: #18351]	Cultivation medium used	ISP 3

[Ref.: #18351]	Colony color	Sulfur yellow (1016)
[Ref.: #18351]	Incubation period	10-14 days
[Ref.: #18351]	Cultivation medium used	ISP 4

[Ref.: #18351]	Colony color	Green beige (1000)/ Sulfur yellow (1016)
[Ref.: #18351]	Incubation period	10-14 days
[Ref.: #18351]	Cultivation medium used	ISP 5

[Ref.: #18351]	Colony color	Sulfur yellow (1016)
[Ref.: #18351]	Incubation period	10-14 days
[Ref.: #18351]	Cultivation medium used	ISP 6

[Ref.: #18351]	Colony color	Green beige (1000)/ Sulfur yellow (1016)
[Ref.: #18351]	Incubation period	10-14 days
[Ref.: #18351]	Cultivation medium used	ISP 7

[Ref.: #29225]

Pigment production

yes

[Ref.: #18351]	Multicellular complex forming ability	no
[Ref.: #18351]	Medium Name (multicellularity)	ISP 3

[Ref.: #18351]	Multicellular complex forming ability	no
[Ref.: #18351]	Medium Name (multicellularity)	ISP 4

[Ref.: #18351]	Multicellular complex forming ability	no
[Ref.: #18351]	Medium Name (multicellularity)	ISP 5

[Ref.: #18351]	Multicellular complex forming ability	no
[Ref.: #18351]	Medium Name (multicellularity)	ISP 6

[Ref.: #18351]	Multicellular complex forming ability	no
[Ref.: #18351]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16728]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #16728]

Culture medium growth

[Ref.: #16728]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16728]

Culture medium composition

expand / minimize

[Ref.: #18351]

Culture medium

ISP 3

[Ref.: #18351]

Culture medium growth

[Ref.: #18351]

Culture medium composition

expand / minimize

[Ref.: #18351]

Culture medium

ISP 4

[Ref.: #18351]

Culture medium growth

[Ref.: #18351]

Culture medium composition

expand / minimize

[Ref.: #18351]

Culture medium

ISP 5

[Ref.: #18351]

Culture medium growth

[Ref.: #18351]

Culture medium composition

expand / minimize

[Ref.: #18351]

Culture medium

ISP 6

[Ref.: #18351]

Culture medium growth

[Ref.: #18351]

Culture medium composition

expand / minimize

[Ref.: #18351]

Culture medium

ISP 7

[Ref.: #18351]

Culture medium growth

[Ref.: #18351]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16728]	growth	20 °C
[Ref.: #18351]	optimum	20 °C
[Ref.: #29225]	growth	0-25 °C
[Ref.: #29225]	optimum	20 °C
[Ref.: #67770]	growth	20 °C

	pH	Kind of pH		pH
[Ref.: #29225]			optimum	7
[Ref.: #29225]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29225]

Oxygen tolerance

aerobe

[Ref.: #29225]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29225]		NaCl		growth	0-3	%
[Ref.: #29225]		NaCl		optimum	1.5	%

[Ref.: #16728]	Murein short key	A11.25
[Ref.: #16728]	Murein types	A3alpha L-Lys-L-Thr-L-Ala

[Ref.: #67770]

Observation

quinones: MK-9(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29225]	2,3-butanediol ChEBI	+	carbon source
[Ref.: #29225]	acetate ChEBI	+	carbon source
[Ref.: #29225]	alanine ChEBI	+	carbon source
[Ref.: #18351]	arabinose ChEBI	+/-
[Ref.: #29225]	arabinose ChEBI	+	carbon source
[Ref.: #29225]	asparagine ChEBI	+	carbon source
[Ref.: #29225]	cellobiose ChEBI	+	carbon source
[Ref.: #18351]	cellulose ChEBI	+/-
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #29225]	dextrin ChEBI	+	carbon source
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #18351]	fructose ChEBI	+
[Ref.: #29225]	fructose ChEBI	+	carbon source
[Ref.: #29225]	galactose ChEBI	+	carbon source
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #18351]	glucose ChEBI	+
[Ref.: #29225]	glutamate ChEBI	+	carbon source
[Ref.: #29225]	glycerol ChEBI	+	carbon source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #29225]	inosine ChEBI	+	carbon source
[Ref.: #29225]	L-arabitol ChEBI	+	carbon source
[Ref.: #29225]	lactose ChEBI	+	carbon source
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #29225]	malate ChEBI	+	carbon source
[Ref.: #29225]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #18351]	mannitol ChEBI	+
[Ref.: #29225]	mannitol ChEBI	+	carbon source
[Ref.: #29225]	mannose ChEBI	+	carbon source
[Ref.: #29225]	melibiose ChEBI	+	carbon source
[Ref.: #29225]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #18351]	myo-inositol ChEBI	+/-
[Ref.: #29225]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #29225]	nitrate ChEBI	+	reduction
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #29225]	propionate ChEBI	+	carbon source
[Ref.: #29225]	putrescine ChEBI	+	carbon source
[Ref.: #29225]	pyruvate ChEBI	+	carbon source
[Ref.: #18351]	raffinose ChEBI	+/-
[Ref.: #18351]	rhamnose ChEBI	+/-
[Ref.: #29225]	ribose ChEBI	+	carbon source
[Ref.: #29225]	serine ChEBI	+	carbon source
[Ref.: #29225]	sorbitol ChEBI	+	carbon source
[Ref.: #29225]	succinate ChEBI	+	carbon source
[Ref.: #18351]	sucrose ChEBI	+
[Ref.: #29225]	sucrose ChEBI	+	carbon source
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #29225]	thymidine ChEBI	+	carbon source
[Ref.: #29225]	trehalose ChEBI	+	carbon source
[Ref.: #29225]	tween 40 ChEBI	+	carbon source
[Ref.: #29225]	tween 80 ChEBI	+	carbon source
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #29225]	uridine ChEBI	+	carbon source
[Ref.: #29225]	xylitol ChEBI	+	carbon source
[Ref.: #18351]	xylose ChEBI	-
[Ref.: #29225]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne
[Ref.: #29225]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18351]	40	-	+	-	-	-	+	+	-	+	-	+	not determinedn.d.	+/-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18351]	61	not determinedn.d.	-	+	+	-	+	+	-	+	-	+	+	-	+	+	+	+	-	+	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	aspartate and asparagine metabolism	100	9 of 9
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	propanol degradation	100	7 of 7
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	cyanate degradation	100	3 of 3
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	reductive acetyl coenzyme A pathway	100	7 of 7
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	citric acid cycle	92.86	13 of 14
[Ref.: #66794]	pentose phosphate pathway	90.91	10 of 11
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	glutamate and glutamine metabolism	89.29	25 of 28
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	allantoin degradation	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	gallate degradation	80	4 of 5
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	methylglyoxal degradation	80	4 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	purine metabolism	79.79	75 of 94
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	NAD metabolism	77.78	14 of 18
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	alanine metabolism	75.86	22 of 29
[Ref.: #66794]	pyrimidine metabolism	75.56	34 of 45
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	metabolism of disaccharids	72.73	8 of 11
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	non-pathway related	71.05	27 of 38
[Ref.: #66794]	arginine metabolism	70.83	17 of 24
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	oxidative phosphorylation	70.33	64 of 91
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	vitamin B1 metabolism	69.23	9 of 13
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	tryptophan metabolism	68.42	26 of 38
[Ref.: #66794]	lipid metabolism	67.74	21 of 31
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	histidine metabolism	65.52	19 of 29
[Ref.: #66794]	methionine metabolism	65.38	17 of 26
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	degradation of sugar acids	60	15 of 25
[Ref.: #66794]	4-hydroxyphenylacetate degradation	60	6 of 10
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	lysine metabolism	54.76	23 of 42
[Ref.: #66794]	urea cycle	53.85	7 of 13
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	androgen and estrogen metabolism	50	8 of 16
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	3-phenylpropionate degradation	46.67	7 of 15
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	degradation of hexoses	44.44	8 of 18
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	degradation of pentoses	42.86	12 of 28
[Ref.: #66794]	glutathione metabolism	42.86	6 of 14
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	41.18	7 of 17
[Ref.: #66794]	ascorbate metabolism	40.91	9 of 22
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	phenol degradation	40	8 of 20
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	sulfate reduction	38.46	5 of 13
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	methane metabolism	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	30.77	4 of 13
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	arachidonic acid metabolism	27.78	5 of 18
[Ref.: #66794]	carotenoid biosynthesis	27.27	6 of 22
[Ref.: #66794]	polyamine pathway	26.09	6 of 23
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	methanogenesis from CO2	25	3 of 12
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16728]	Sample type/isolated from	guano of Adélie penguins
[Ref.: #16728]	Continent	Australia and Oceania

[Ref.: #67770]	Sample type/isolated from	Guano of Adélie penguins
[Ref.: #67770]	Country	Antarctica
[Ref.: #67770]	Country ISO 3 Code	ATA
[Ref.: #67770]	Continent	Antarctica
* marker position based on {}

Isolation sources categories

#Host	#Birds	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ810896 (>99% sequence identity) for Arthrobacter from Microbeatlas

Aquatic Samples	471
Soil Samples	738
Animal Samples	1302
Plant Samples	117
Total Samples	2628

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16728]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16728]	Arthrobacter psychrochitiniphilus partial 16S rRNA gene, type strain GP3T	AJ810896	1276	GenBank ENA	291045 tax ID
[Ref.: #20218]	Arthrobacter psychrochitiniphilus gene for 16S rRNA, partial sequence, strain: JCM 13874	AB588633	1446	GenBank ENA	291045 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Arthrobacter psychrochitiniphilus DSM 23143	GCA_013408645	contig	GenBank ENA	291045 tax ID
[Ref.: #67770]	Arthrobacter psychrochitiniphilus GP3	GCA_003185915	scaffold	GenBank ENA	291045 tax ID
[Ref.: #66792]	Arthrobacter psychrochitiniphilus strain DSM 23143	291045.5	wgs	PATRIC	291045 tax ID	*
[Ref.: #66792]	Arthrobacter psychrochitiniphilus strain GP3	291045.4	wgs	PATRIC	291045 tax ID	*
[Ref.: #66792]	Arthrobacter psychrochitiniphilus GP3	2866268577	draft	JGI IMG/M	291045 tax ID	*
[Ref.: #66792]	Arthrobacter psychrochitiniphilus DSM 23143	2844608859	draft	JGI IMG/M	291045 tax ID	*

[Ref.: #16728]	GC-content	58.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29225]	GC-content	58.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Arthrobacter psychrochitiniphilus GP3 NCBI: GCA_003185915.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Arthrobacter psychrochitiniphilus strain DSM 23143 PATRIC: 291045.5
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	93.632	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.712	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	71.318	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.5	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.929	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93.5	no

Availability in culture collections External links

[Ref.: #16728]

Culture collection no.

DSM 23143, CGMCC 1.6355, JCM 13874

[Ref.: #77067]

SI-ID 312284

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arthrobacter psychrochitiniphilus sp. nov., a psychrotrophic bacterium isolated from Antarctica.	Wang F, Gai Y, Chen M, Xiao X	Int J Syst Evol Microbiol	10.1099/ijs.0.008912-0	2009	*

References

#16728

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23143

#18351

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#29225

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25646 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77067

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID312284.1 )

#25646

IJSEM 2759 2009 ( DOI 10.1099/ijs.0.008912-0 , PubMed 19625417 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Arthrobacter psychrochitiniphilus in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Arthrobacter psychrochitiniphilus GP3

Arthrobacter psychrochitiniphilus strain DSM 23143

Change proposal

Change proposal