Arthrobacter stackebrandtii (DSM 16005, CCM 2783, CIP 108701)

Name: Arthrobacter stackebrandtii (DSM 16005, CCM 2783, CIP 108701)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7612

Type strain

Strain Designation AC 836, AC 8.36

Culture col. no. DSM 16005 CCM 2783 CIP 108701 AC 836 LMG 16145 3 more

NCBI tax ID(s) 272161

Special Collections DSMZ JCM CIP Literature strains

History DSMZ <- CCM <- J. Antheunisse; AC 836 JCM <-- CCM 2783 <-- J. Antheunisse AC 836 (Arthrobacter aurescens). CIP <- 2013, DSMZ <- CCM <- J. Antheunisse: strain AC 8.36

Links

Arthrobacter stackebrandtii AC 836 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from poultry litter.

Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 8174

LMG 16145,CCM 2783,DSM 16005,JCM 14116,CIP 108701,IAM 15316

@ref 20215

Last LPSN update 2026-05-29 08:26:41

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Arthrobacter

Species Arthrobacter stackebrandtii

Full scientific name Arthrobacter stackebrandtii Tvrzová et al. 2005

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
31376	positive	rod-shaped
123293	positive	rod-shaped

Colony morphology

123293

Hemolysis ability1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6236	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
39867	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123293	CIP Medium 72	Medium recipe at CIP
123293	CIP Medium 328	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
6236	positive	growth	28
39867	positive	growth	30
67770	positive	growth	28
123293	positive	growth	10-30
123293	negative	growth	37
123293	negative	growth	41
123293	negative	growth	45

Culture pH

@ref	Ability	Type	PH	PH range
31376	positive	optimum	7.4
31376	positive	growth	5.7-9.1	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31376	aerobe
123293	obligate aerobe
125439	facultative anaerobe	90.645

Spore formation

@ref	Spore formation	Confidence
31376
125439		93.005

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31376	NaCl	positive	optimum	5 %
123293	NaCl	positive	growth	0-4 %
123293	NaCl		growth	6 %
123293	NaCl		growth	8 %
123293	NaCl		growth	10 %

Murein

@ref	Murein short key	Type
6236	A11.28	A3alpha L-Lys-L-Thr-L-Ala₃

Observation

67770

Observationquinones: MK-9(H₂), MK-10(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31376	22599 ChEBI	arabinose	+	carbon source
31376	22653 ChEBI	asparagine	+	carbon source
31376	17057 ChEBI	cellobiose	+	carbon source
123293	16947 ChEBI	citrate	+	carbon source
123293	4853 ChEBI	esculin	+	hydrolysis
31376	28757 ChEBI	fructose	+	carbon source
31376	33984 ChEBI	fucose	+	carbon source
31376	28260 ChEBI	galactose	+	carbon source
31376	5291 ChEBI	gelatin	+	carbon source
31376	17234 ChEBI	glucose	+	carbon source
31376	17754 ChEBI	glycerol	+	carbon source
123293	606565 ChEBI	hippurate	+	hydrolysis
31376	17596 ChEBI	inosine	+	carbon source
31376	18403 ChEBI	L-arabitol	+	carbon source
31376	17716 ChEBI	lactose	+	carbon source
31376	17306 ChEBI	maltose	+	carbon source
31376	37684 ChEBI	mannose	+	carbon source
31376	28053 ChEBI	melibiose	+	carbon source
31376	51850 ChEBI	methyl pyruvate	+	carbon source
31376	17632 ChEBI	nitrate	+	reduction
123293	17632 ChEBI	nitrate	+	reduction
123293	17632 ChEBI	nitrate	-	respiration
123293	16301 ChEBI	nitrite	-	reduction
31376	15361 ChEBI	pyruvate	+	carbon source
31376	16634 ChEBI	raffinose	+	carbon source
31376	33942 ChEBI	ribose	+	carbon source
31376	17814 ChEBI	salicin	+	carbon source
31376	17992 ChEBI	sucrose	+	carbon source
31376	17748 ChEBI	thymidine	+	carbon source
31376	27082 ChEBI	trehalose	+	carbon source
31376	53423 ChEBI	tween 40	+	carbon source
31376	16704 ChEBI	uridine	+	carbon source
31376	18222 ChEBI	xylose	+	carbon source

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
123293	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123293	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
123293	15688 ChEBI	acetoin	-
123293	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
123293	alcohol dehydrogenase	-	1.1.1.1
123293	amylase	+
123293	beta-galactosidase	+	3.2.1.23
123293	caseinase	-	3.4.21.50
31376	catalase	+	1.11.1.6
123293	catalase	+	1.11.1.6
123293	DNase	+
123293	gamma-glutamyltransferase	-	2.3.2.2
123293	gelatinase	+/-
123293	lecithinase	-
123293	lipase	-
123293	lysine decarboxylase	-	4.1.1.18
123293	ornithine decarboxylase	+	4.1.1.17
123293	oxidase	-
123293	phenylalanine ammonia-lyase	-	4.3.1.24
123293	protease	+
31376	pyrazinamidase	+	3.5.1.B15
123293	tryptophan deaminase	-
123293	tween esterase	-
31376	urease	+	3.5.1.5
123293	urease	+	3.5.1.5

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
123293	not determinedn.d.	+	+	+	-	+	-	+	+	+	+	+	+	+	+	-	+	+	+	+	-	+	+	+	-	+	+	+	-	+	-	-	+	-	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	+	+	+	-	-	-	-	-	-	-	-	-	+	+	-	-	+	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Birds	-
#Engineered	#Waste	-
#Engineered	#Waste	#Solid animal waste

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Isolation date
6236	poultry litter	Netherlands	NLD	Europe
67770	Poultry litter	Netherlands	NLD	Europe
123293	Poultry, litter	Netherlands	NLD	Europe	1970

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6236	1	Risk group (German classification) According to TRBA 466
123293	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1787667v1 assembly for Arthrobacter stackebrandtii DSM 16005	contig	GCA_017876675	272161.4	2918386808	272161	78.61
67770	ASM321763v1 assembly for Arthrobacter stackebrandtii CCM 2783	scaffold	GCA_003217635	272161.3		272161	0

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
6236	Arthrobacter stackebrandtii partial 16S rRNA gene, type strain CCM 2783	AJ640198	1517	272161
124043	Arthrobacter stackebrandtii strain CCM 2783 16S ribosomal RNA gene, partial sequence.	KR709316	499	272161
124043	Arthrobacter stackebrandtii strain CCM 2783 16S ribosomal RNA gene, partial sequence.	MT760094	1347	272161

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1787667v1 assembly for Arthrobacter stackebrandtii DSM 16005
BV-BRC: 272161.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	90.65	no
125439	gram_stain	BacteriaNetⓘ	positive	78.01	no
125439	motility	BacteriaNetⓘ	no	78.41	no
125439	spore_formation	BacteriaNetⓘ	no	93.01	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Arthrobacter stackebrandtii strain CCM 2783
PATRIC: 272161.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	68.82	yes
125438	anaerobic	anaerobicⓘ	no	97.57	yes
125438	spore-forming	spore-formingⓘ	no	60.76	no
125438	aerobic	aerobicⓘ	yes	85.05	yes
125438	thermophilic	thermophileⓘ	no	97.00	yes
125438	flagellated	motile2+ⓘ	no	59.53	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Comprehensive genome-wide analysis for the safety assessment of microbial biostimulants in agricultural applications.	Bellotti G, Cortimiglia C, Antinori ME, Cocconcelli PS, Puglisi E.	Microb Genom	10.1099/mgen.0.001391	2025
	Systematic Review of Actinomycetes in the Baijiu Fermentation Microbiome.	Chen C, Yang H, Liu J, Luo H, Zou W.	Foods	10.3390/foods11223551	2022
	Novel Culturing Techniques Select for Heterotrophs and Hydrocarbon Degraders in a Subantarctic Soil.	van Dorst JM, Hince G, Snape I, Ferrari BC.	Sci Rep	10.1038/srep36724	2016
	Topographical Mapping of the Rainbow Trout (Oncorhynchus mykiss) Microbiome Reveals a Diverse Bacterial Community with Antifungal Properties in the Skin.	Lowrey L, Woodhams DC, Tacchi L, Salinas I.	Appl Environ Microbiol	10.1128/aem.01826-15	2015
Metabolism	Identification of Mn(II)-oxidizing bacteria from a low-pH contaminated former uranium mine.	Akob DM, Bohu T, Beyer A, Schaffner F, Handel M, Johnson CA, Merten D, Buchel G, Totsche KU, Kusel K.	Appl Environ Microbiol	10.1128/aem.01296-14	2014
Phylogeny	Arthrobacter alpinus sp. nov., a psychrophilic bacterium isolated from alpine soil.	Zhang DC, Schumann P, Liu HC, Xin YH, Zhou YG, Schinner F, Margesin R.	Int J Syst Evol Microbiol	10.1099/ijs.0.017178-0	2010
Phylogeny	Arthrobacter livingstonensis sp. nov. and Arthrobacter cryotolerans sp. nov., salt-tolerant and psychrotolerant species from Antarctic soil.	Ganzert L, Bajerski F, Mangelsdorf K, Lipski A, Wagner D.	Int J Syst Evol Microbiol	10.1099/ijs.0.021022-0	2011
Phylogeny	Arthrobacter wenxiniae sp. nov., a novel plant growth-promoting rhizobacteria species harbouring a carotenoids biosynthetic gene cluster.	Sun YC, Sun P, Xue J, Du Y, Yan H, Wang LW, Yi XX, Sun JG, Zhang X, Gao JL	Antonie Van Leeuwenhoek	10.1007/s10482-021-01701-9	2022
Phylogeny	Arthrobacter dokdonellae sp. nov., isolated from a plant of the genus Campanula.	Koh HW, Kang MS, Lee KE, Lee EY, Kim H, Park SJ	J Microbiol	10.1007/s12275-019-8540-x	2019
Phylogeny	Polyphasic taxonomic study of strain CCM 2783 resulting in the description of Arthrobacter stackebrandtii sp. nov.	Tvrzova L, Schumann P, Sproer C, Sedlacek I, Verbarg S, Kroppenstedt RM, Pacova Z	Int J Syst Evol Microbiol	10.1099/ijs.0.63428-0	2005

References

#6236	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16005
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27689	IJSEM 805 2005 ( DOI 10.1099/ijs.0.63428-0 , PubMed 15774666 )
#31376	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27689
#39867	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#123293	Collection of Institut Pasteur ; Curators of the CIP; CIP 108701
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Arthrobacter stackebrandtii (DSM 16005, CCM 2783, CIP 108701)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Murein

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_017876675

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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