Glutamicibacter bergerei (DSM 17432, CGMCC 1.3685, JCM 12921)

Name: Glutamicibacter bergerei (DSM 17432, CGMCC 1.3685, JCM 12921)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7613

Type strain

Strain Designation An25

Culture col. no. DSM 17432 CGMCC 1.3685 JCM 12921 An25 CIP 109137

NCBI tax ID(s) 225894

Special Collections DSMZ JCM CIP

History <- JCM <- M.Chen An25 <- P.Wang 2006, F. Wang, Res. State Ocean. Admin., Xiamen, China: strain An25 M. Chen An25 <-- P. Wang. CIP <- 2006, F. Wang, Res. State Ocean. Admin., Xiamen, China: strain An25

Links

Glutamicibacter bergerei An25 is an obligate aerobe, mesophilic, Gram-positive prokaryote that was isolated from lake sediment.

Gram-positive motile rod-shaped obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 231846

JCM 12921,CGMCC 1.3685,DSM 17432,CIP 109137

@ref 20215

Last LPSN update 2026-02-09 11:19:30

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Glutamicibacter

Species Glutamicibacter bergerei

Full scientific name Glutamicibacter bergerei (Irlinger et al. 2005) Busse 2016

Synonyms (3)

Arthrobacter ardleyensis
Arthrobacter bergerei
Glutamicibacter ardleyensis

BacDive ID	Other strains from **Glutamicibacter bergerei** (2)	Type strain
7601	G. bergerei Ca106, DSM 16367, CIP 108036, CCUG 52342, ... (type strain)
154950	G. bergerei CCUG 55840

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
116481	positive	rod-shaped

Colony morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6983	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
41908	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116481	CIP Medium 72	Medium recipe at CIP
116481	CIP Medium 368	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6983	positive	growth	25	mesophilic
41908	positive	growth	30	mesophilic
67770	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

116481

Oxygen toleranceobligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		96.3

Observation

67770

Observationquinones: MK-8, MK-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
116481	17632 ChEBI	nitrate	+	reduction
116481	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116481	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116481	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116481	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	+		from API zym
116481	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116481	ornithine decarboxylase	-	4.1.1.17
116481	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
116481	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116481	-	+	+	+	+	+	+	+	-	-	+	+	-	-	-	+	-	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Isolation date
6983	lake sediment	Antarctica	ATA	Australia and Oceania
67770	Antarctic Ardley lake sediment
116481	Environment, Antarctic lake sediment	Antarctica	ATA	Antarctica	1998

Taxonmaps

69479

Global distribution of 16S sequence AJ551163 (>99% sequence identity) for Glutamicibacter from Microbeatlas

Aquatic Samples	119
Soil Samples	175
Animal Samples	1072
Plant Samples	120
Total Samples	1486

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6983	1	Risk group (German classification) According to TRBA 466
116481	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM4243372v1 assembly for Glutamicibacter ardleyensis CGMCC 1.3685	scaffold	GCA_042433725			225894	72.84
66792	ASM1464455v1 assembly for Glutamicibacter ardleyensis CGMCC 1.3685	scaffold	GCA_014644555	225894.3	8066513294	225894	70.53

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6983	Arthrobacter ardleyensis partial 16S rRNA gene, type strain An25	AJ551163	1488		225894
124043	Glutamicibacter ardleyensis strain CGMCC 1.3685 16S ribosomal RNA gene, partial sequence.	MT759863	1344		225894

GC content

6983

GC-content (mol%)55

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Glutamicibacter ardleyensis CGMCC 1.3685
NCBI: GCA_014644555

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.30	no
125439	motility	BacteriaNetⓘ	no	79.20	no
125439	gram_stain	BacteriaNetⓘ	positive	73.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	76.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Glutamicibacter ardleyensis CGMCC 1.3685
NCBI: GCA_014644555.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.24	no
125438	anaerobic	anaerobicⓘ	no	98.31	yes
125438	aerobic	aerobicⓘ	yes	87.82	yes
125438	spore-forming	spore-formingⓘ	no	73.31	no
125438	thermophilic	thermophileⓘ	no	97.50	no
125438	flagellated	motile2+ⓘ	no	72.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Effects of ciprofloxacin on bacterial abundance and enrichments in samples taken from the sea surface microlayer and underlying waters in the southern North Sea.	Adenaya A, Zumbika F, Rios-Quintero R, Lara-Martin PA, Wurl O, Konneke M, Ribas-Ribas M, Hamprecht A, Brinkhoff T.	Front Microbiol	10.3389/fmicb.2025.1624041	2025
Phylogeny	Arthrobacter endophyticus sp. nov., an endophytic actinobacterium isolated from root of Salsola affinis C. A. Mey.	Wang HF, Li L, Zhang YG, Hozzein WN, Zhou XK, Liu WH, Duan YQ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.000235	2015
Phylogeny	Arthrobacter ardleyensis sp. nov., isolated from Antarctic lake sediment and deep-sea sediment.	Chen M, Xiao X, Wang P, Zeng X, Wang F	Arch Microbiol	10.1007/s00203-005-0772-y	2005

References

#6983	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17432
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#41908	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116481	Collection of Institut Pasteur ; Curators of the CIP; CIP 109137
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Glutamicibacter bergerei (DSM 17432, CGMCC 1.3685, JCM 12921)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042433725

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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