Strain identifier

BacDive ID: 7612

Type strain: Yes

Species: Arthrobacter stackebrandtii

Strain Designation: AC 836, AC 8.36

Strain history: CIP <- 2013, DSMZ <- CCM <- J. Antheunisse: strain AC 8.36

NCBI tax ID(s): 272161 (species)

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General

@ref: 6236

BacDive-ID: 7612

DSM-Number: 16005

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped

description: Arthrobacter stackebrandtii AC 836 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from poultry litter.

NCBI tax id

  • NCBI tax id: 272161
  • Matching level: species

strain history

@refhistory
6236<- CCM <- J. Antheunisse; AC 836
67770CCM 2783 <-- J. Antheunisse AC 836 (Arthrobacter aurescens).
123293CIP <- 2013, DSMZ <- CCM <- J. Antheunisse: strain AC 8.36

doi: 10.13145/bacdive7612.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Arthrobacter
  • species: Arthrobacter stackebrandtii
  • full scientific name: Arthrobacter stackebrandtii Tvrzová et al. 2005

@ref: 6236

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Arthrobacter

species: Arthrobacter stackebrandtii

full scientific name: Arthrobacter stackebrandtii Tvrzová et al. 2005

strain designation: AC 836, AC 8.36

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
31376positiverod-shapedno
69480positive100
123293positiverod-shapedno

colony morphology

  • @ref: 123293
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6236TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
39867MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123293CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
123293CIP Medium 328yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=328

culture temp

@refgrowthtypetemperaturerange
6236positivegrowth28mesophilic
39867positivegrowth30mesophilic
67770positivegrowth28mesophilic
123293positivegrowth10-30
123293nogrowth37mesophilic
123293nogrowth41thermophilic
123293nogrowth45thermophilic

culture pH

@refabilitytypepHPH range
31376positivegrowth5.7-9.1alkaliphile
31376positiveoptimum7.4

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31376aerobe
123293obligate aerobe

spore formation

@refspore formationconfidence
31376no
69481no92
69480no99.826

halophily

@refsaltgrowthtested relationconcentration
31376NaClpositiveoptimum5 %
123293NaClpositivegrowth0-4 %
123293NaClnogrowth6 %
123293NaClnogrowth8 %
123293NaClnogrowth10 %

murein

  • @ref: 6236
  • murein short key: A11.28
  • type: A3alpha L-Lys-L-Thr-L-Ala3

observation

  • @ref: 67770
  • observation: quinones: MK-9(H2), MK-10(H2)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3137622599arabinose+carbon source
3137618403L-arabitol+carbon source
3137622653asparagine+carbon source
3137617057cellobiose+carbon source
3137628757fructose+carbon source
3137633984fucose+carbon source
3137628260galactose+carbon source
313765291gelatin+carbon source
3137617234glucose+carbon source
3137617754glycerol+carbon source
3137617596inosine+carbon source
3137617716lactose+carbon source
3137617306maltose+carbon source
3137637684mannose+carbon source
3137628053melibiose+carbon source
3137651850methyl pyruvate+carbon source
3137615361pyruvate+carbon source
3137616634raffinose+carbon source
3137633942ribose+carbon source
3137617814salicin+carbon source
3137617992sucrose+carbon source
3137617748thymidine+carbon source
3137627082trehalose+carbon source
3137653423tween 40+carbon source
3137616704uridine+carbon source
3137618222xylose+carbon source
3137617632nitrate+reduction
12329316947citrate+carbon source
1232934853esculin+hydrolysis
123293606565hippurate+hydrolysis
12329317632nitrate+reduction
12329316301nitrite-reduction
12329317632nitrate-respiration

antibiotic resistance

  • @ref: 123293
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 123293
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12329315688acetoin-
12329317234glucose-

enzymes

@refvalueactivityec
31376catalase+1.11.1.6
31376pyrazinamidase+3.5.1.B15
31376urease+3.5.1.5
123293oxidase-
123293beta-galactosidase+3.2.1.23
123293alcohol dehydrogenase-1.1.1.1
123293gelatinase+/-
123293amylase+
123293DNase+
123293caseinase-3.4.21.50
123293catalase+1.11.1.6
123293tween esterase-
123293gamma-glutamyltransferase-2.3.2.2
123293lecithinase-
123293lipase-
123293lysine decarboxylase-4.1.1.18
123293ornithine decarboxylase+4.1.1.17
123293phenylalanine ammonia-lyase-4.3.1.24
123293protease+
123293tryptophan deaminase-
123293urease+3.5.1.5

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123293+++-+-++++++++-++++-+++-+++-+--+-++++------------+---++----+------------+--+--+++---------++--+-+--

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentisolation date
6236poultry litterNetherlandsNLDEurope
67770Poultry litterNetherlandsNLDEurope
123293Poultry, litterNetherlandsNLDEurope1970

isolation source categories

Cat1Cat2Cat3
#Host#Birds
#Engineered#Waste
#Engineered#Waste#Solid animal waste

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
62361Risk group (German classification)
1232931Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6236
  • description: Arthrobacter stackebrandtii partial 16S rRNA gene, type strain CCM 2783
  • accession: AJ640198
  • length: 1517
  • database: ena
  • NCBI tax ID: 272161

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Arthrobacter stackebrandtii DSM 16005GCA_017876675contigncbi272161
66792Arthrobacter stackebrandtii strain CCM 2783272161.3wgspatric272161
66792Arthrobacter stackebrandtii strain DSM 16005272161.4wgspatric272161
66792Arthrobacter stackebrandtii DSM 160052918386808draftimg272161
67770Arthrobacter stackebrandtii CCM 2783GCA_003217635scaffoldncbi272161

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno92no
motileno73.087yes
gram-positiveno63.806no
anaerobicno99.179no
halophileno92.779no
spore-formingno87.881yes
glucose-utilyes86.807no
aerobicyes91.002yes
flagellatedno89.109yes
thermophileno99.862yes
glucose-fermentno83.936no

External links

@ref: 6236

culture collection no.: DSM 16005, CCM 2783, CIP 108701, JCM 14116, IAM 15316, LMG 16145

straininfo link

  • @ref: 77056
  • straininfo: 8174

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15774666Polyphasic taxonomic study of strain CCM 2783 resulting in the description of Arthrobacter stackebrandtii sp. nov.Tvrzova L, Schumann P, Sproer C, Sedlacek I, Verbarg S, Kroppenstedt RM, Pacova ZInt J Syst Evol Microbiol10.1099/ijs.0.63428-02005Arthrobacter/chemistry/*classification/genetics/physiology, *Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny31079331Arthrobacter dokdonellae sp. nov., isolated from a plant of the genus Campanula.Koh HW, Kang MS, Lee KE, Lee EY, Kim H, Park SJJ Microbiol10.1007/s12275-019-8540-x2019Arthrobacter/classification/genetics/*isolation & purification/metabolism, Base Composition, Campanulaceae/*microbiology, Cell Wall/genetics/metabolism, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Peptidoglycan/chemistry/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of KoreaMetabolism
Phylogeny35088183Arthrobacter wenxiniae sp. nov., a novel plant growth-promoting rhizobacteria species harbouring a carotenoids biosynthetic gene cluster.Sun YC, Sun P, Xue J, Du Y, Yan H, Wang LW, Yi XX, Sun JG, Zhang X, Gao JLAntonie Van Leeuwenhoek10.1007/s10482-021-01701-92022*Arthrobacter, Bacterial Typing Techniques, Carotenoids, DNA, Bacterial/genetics, Fatty Acids, Multigene Family, Nucleic Acid Hybridization, Peptidoglycan, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2Transcriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
6236Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16005)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16005
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31376Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2768928776041
39867Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6359
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77056Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID8174.1StrainInfo: A central database for resolving microbial strain identifiers
123293Curators of the CIPCollection of Institut Pasteur (CIP 108701)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108701