Name: Pseudarthrobacter sulfonivorans ALL
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7587

Type strain:

Species: Pseudarthrobacter sulfonivorans

Strain Designation: ALL

Culture col. no.: DSM 14002, ATCC BAA-112, JCM 13520, IAM 15312

Strain history: DSM 14002 <-- A. P. Wood strain ALL.

NCBI tax ID(s): 121292 (species)

SI-ID 87708

ATCC BAA-112, DSM 14002, JCM 13520, IAM 15312

Section

Pseudarthrobacter sulfonivorans ALL is a mesophilic bacterium that was isolated from soil from root balls of Allium aflatunense.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Pseudarthrobacter*
	Species	**Pseudarthrobacter sulfonivorans**
	Full Scientific Name (LPSN)	Pseudarthrobacter sulfonivorans (Borodina et al. 2002) Busse 2016

Synonym

Arthrobacter sulfonivorans

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5128]

Culture medium

METHYLOTROPHIC ARTHROBACTER AND HYPHOMICROBIUM MEDIUM (DSMZ Medium 939)

[Ref.: #5128]

Culture medium growth

[Ref.: #5128]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5128]

Culture medium composition

expand / minimize

[Ref.: #5128]

Culture medium

CORYNEBACTERIUM AGAR (DSMZ Medium 53)

[Ref.: #5128]

Culture medium growth

[Ref.: #5128]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5128]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5128]			growth	28 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #5128]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-9(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5128]	Sample type/isolated from	soil from root balls of Allium aflatunense
[Ref.: #5128]	Host species	Allium aflatunense
[Ref.: #5128]	Geographic location (country and/or sea, region)	Warwickshire
[Ref.: #5128]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Soil from the root ball of Allium aflatunense
[Ref.: #67770]	Host species	Allium aflatunense
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF235091 (>99% sequence identity) for Pseudarthrobacter from Microbeatlas

Aquatic Samples	109
Soil Samples	822
Animal Samples	156
Plant Samples	439
Total Samples	1526

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5128]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5128]	Arthrobacter sulfonivorans 16S ribosomal RNA gene, partial sequence	AF235091	1457	ENA	121292 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudarthrobacter sulfonivorans ALL	GCA_014712225	contig	GenBank	121292 tax ID	*

[Ref.: #5128]	GC-content	61 mol%
[Ref.: #67770]	GC-content	61 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudarthrobacter sulfonivorans ALL NCBI: GCA_014712225.1
[Ref.: #69480]	flagellated	no	96.185	no
[Ref.: #69480]	gram-positive	yes	93.668	no
[Ref.: #69480]	anaerobic	no	99.648	no
[Ref.: #69480]	aerobic	yes	96.691	no
[Ref.: #69480]	halophile	no	85.701	no
[Ref.: #69480]	spore-forming	no	86.268	no
[Ref.: #69480]	glucose-util	yes	85.621	no
[Ref.: #69480]	thermophile	no	99.281	yes
[Ref.: #69480]	motile	no	89.215	no
[Ref.: #69480]	glucose-ferment	no	87.685	no

Availability in culture collections External links

[Ref.: #5128]

Culture collection no.

DSM 14002, ATCC BAA-112, JCM 13520, IAM 15312

[Ref.: #77031]

SI-ID 87708

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arthrobacter ginsengisoli sp. nov., isolated from soil of a ginseng field.	Siddiqi MZ, Kim YJ, Hoang VA, Siddiqi MH, Huq MA, Yang DC	Arch Microbiol	10.1007/s00203-014-1025-8	2014	*

References

#5128

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14002

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#77031

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID87708.1 )

* These data were automatically processed and therefore are not curated

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