Strain identifier

BacDive ID: 7587

Type strain: Yes

Species: Pseudarthrobacter sulfonivorans

Strain Designation: ALL

Strain history: DSM 14002 <-- A. P. Wood strain ALL.

NCBI tax ID(s): 121292 (species)

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General

@ref: 5128

BacDive-ID: 7587

DSM-Number: 14002

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Pseudarthrobacter sulfonivorans ALL is a mesophilic bacterium that was isolated from soil from root balls of Allium aflatunense.

NCBI tax id

  • NCBI tax id: 121292
  • Matching level: species

strain history

@refhistory
5128<- A. P. Wood; ALL
67770DSM 14002 <-- A. P. Wood strain ALL.

doi: 10.13145/bacdive7587.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Pseudarthrobacter
  • species: Pseudarthrobacter sulfonivorans
  • full scientific name: Pseudarthrobacter sulfonivorans (Borodina et al. 2002) Busse 2016
  • synonyms

    • @ref: 20215
    • synonym: Arthrobacter sulfonivorans

@ref: 5128

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Pseudarthrobacter

species: Pseudarthrobacter sulfonivorans

full scientific name: Pseudarthrobacter sulfonivorans (Borodina et al. 2002) Busse 2016

strain designation: ALL

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5128METHYLOTROPHIC ARTHROBACTER AND HYPHOMICROBIUM MEDIUM (DSMZ Medium 939)yeshttps://mediadive.dsmz.de/medium/939Name: METHYLOTROPHIC ARTHROBACTER AND HYPHOMICROBIUM MEDIUM (DSMZ Medium 939) Composition: Methanol 7.92 g/l Na2HPO4 x 2 H2O 7.9 g/l KH2PO4 1.5 g/l NH4Cl 0.8 g/l EDTA 0.5 g/l MgSO4 x 7 H2O 0.1 g/l CaCl2 x 2 H2O 0.0734 g/l FeSO4 x 7 H2O 0.05 g/l MnCl2 x 4 H2O 0.025 g/l ZnSO4 x 7 H2O 0.01 g/l CoCl2 x 6 H2O 0.005 g/l (NH4)6Mo7O24 0.005 g/l CuSO4 x 5 H2O 0.002 g/l Distilled water
5128CORYNEBACTERIUM AGAR (DSMZ Medium 53)yeshttps://mediadive.dsmz.de/medium/53Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
5128positivegrowth28mesophilic
67770positivegrowth25mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H2)

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcontinent
5128soil from root balls of Allium aflatunenseAllium aflatunenseWarwickshireEurope
67770Soil from the root ball of Allium aflatunenseAllium aflatunense

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root (Rhizome)

taxonmaps

  • @ref: 69479
  • File name: preview.99_130.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_99;97_106;98_115;99_130&stattab=map
  • Last taxonomy: Pseudarthrobacter
  • 16S sequence: AF235091
  • Sequence Identity:
  • Total samples: 1526
  • soil counts: 822
  • aquatic counts: 109
  • animal counts: 156
  • plant counts: 439

Safety information

risk assessment

  • @ref: 5128
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 5128
  • description: Arthrobacter sulfonivorans 16S ribosomal RNA gene, partial sequence
  • accession: AF235091
  • length: 1457
  • database: ena
  • NCBI tax ID: 121292

Genome sequences

  • @ref: 66792
  • description: Pseudarthrobacter sulfonivorans ALL
  • accession: GCA_014712225
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 121292

GC content

@refGC-contentmethod
512861
6777061thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno96.185no
gram-positiveyes93.668no
anaerobicno99.648no
aerobicyes96.691no
halophileno85.701no
spore-formingno86.268no
glucose-utilyes85.621no
thermophileno99.281yes
motileno89.215no
glucose-fermentno87.685no

External links

@ref: 5128

culture collection no.: DSM 14002, ATCC BAA 112, JCM 13520, IAM 15312

straininfo link

  • @ref: 77031
  • straininfo: 87708

literature

  • topic: Phylogeny
  • Pubmed-ID: 25150449
  • title: Arthrobacter ginsengisoli sp. nov., isolated from soil of a ginseng field.
  • authors: Siddiqi MZ, Kim YJ, Hoang VA, Siddiqi MH, Huq MA, Yang DC
  • journal: Arch Microbiol
  • DOI: 10.1007/s00203-014-1025-8
  • year: 2014
  • mesh: Arthrobacter/classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Genes, rRNA, Lipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, *Panax, Peptidoglycan/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
5128Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14002)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14002
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
77031Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID87708.1StrainInfo: A central database for resolving microbial strain identifiers