Strain identifier
BacDive ID: 7587
Type strain: 
Species: Pseudarthrobacter sulfonivorans
Strain Designation: ALL
Strain history: DSM 14002 <-- A. P. Wood strain ALL.
NCBI tax ID(s): 121292 (species)
version 9.1 (current version)
General
@ref: 5128
BacDive-ID: 7587
DSM-Number: 14002
keywords: genome sequence, 16S sequence, Bacteria, Gram-positive
description: Pseudarthrobacter sulfonivorans ALL is a Gram-positive bacterium that was isolated from soil from root balls of Allium aflatunense.
NCBI tax id
- NCBI tax id: 121292
- Matching level: species
strain history
| @ref | history |
|---|---|
| 5128 | <- A. P. Wood; ALL |
| 67770 | DSM 14002 <-- A. P. Wood strain ALL. |
doi: 10.13145/bacdive7587.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Pseudarthrobacter
- species: Pseudarthrobacter sulfonivorans
- full scientific name: Pseudarthrobacter sulfonivorans (Borodina et al. 2002) Busse 2016
synonyms
- @ref: 20215
- synonym: Arthrobacter sulfonivorans
@ref: 5128
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Pseudarthrobacter
species: Pseudarthrobacter sulfonivorans
full scientific name: Pseudarthrobacter sulfonivorans (Borodina et al. 2002) Busse 2016
strain designation: ALL
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 91 | |
| 69480 | 91.285 | positive |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 5128 | METHYLOTROPHIC ARTHROBACTER AND HYPHOMICROBIUM MEDIUM (DSMZ Medium 939) | yes | https://mediadive.dsmz.de/medium/939 | Name: METHYLOTROPHIC ARTHROBACTER AND HYPHOMICROBIUM MEDIUM (DSMZ Medium 939) Composition: Methanol 7.92 g/l Na2HPO4 x 2 H2O 7.9 g/l KH2PO4 1.5 g/l NH4Cl 0.8 g/l EDTA 0.5 g/l MgSO4 x 7 H2O 0.1 g/l CaCl2 x 2 H2O 0.0734 g/l FeSO4 x 7 H2O 0.05 g/l MnCl2 x 4 H2O 0.025 g/l ZnSO4 x 7 H2O 0.01 g/l CoCl2 x 6 H2O 0.005 g/l (NH4)6Mo7O24 0.005 g/l CuSO4 x 5 H2O 0.002 g/l Distilled water |
| 5128 | CORYNEBACTERIUM AGAR (DSMZ Medium 53) | yes | https://mediadive.dsmz.de/medium/53 | Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 5128 | positive | growth | 28 |
| 67770 | positive | growth | 25 |
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: aerobe
- confidence: 91.35
observation
- @ref: 67770
- observation: quinones: MK-9(H2)
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | continent |
|---|---|---|---|---|
| 5128 | soil from root balls of Allium aflatunense | Allium aflatunense | Warwickshire | Europe |
| 67770 | Soil from the root ball of Allium aflatunense | Allium aflatunense |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
taxonmaps
- @ref: 69479
- File name: preview.99_130.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_99;97_106;98_115;99_130&stattab=map
- Last taxonomy: Pseudarthrobacter
- 16S sequence: AF235091
- Sequence Identity:
- Total samples: 1526
- soil counts: 822
- aquatic counts: 109
- animal counts: 156
- plant counts: 439
Safety information
risk assessment
- @ref: 5128
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5128
- description: Arthrobacter sulfonivorans 16S ribosomal RNA gene, partial sequence
- accession: AF235091
- length: 1457
- database: nuccore
- NCBI tax ID: 121292
Genome sequences
- @ref: 66792
- description: Pseudarthrobacter sulfonivorans ALL
- accession: GCA_014712225
- assembly level: contig
- database: ncbi
- NCBI tax ID: 121292
GC content
| @ref | GC-content | method |
|---|---|---|
| 5128 | 61 | |
| 67770 | 61 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 91.285 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.909 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 91.35 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 62.802 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 97.5 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 91 | no |
External links
@ref: 5128
culture collection no.: DSM 14002, ATCC BAA-112, JCM 13520, IAM 15312
straininfo link
- @ref: 77031
- straininfo: 87708
literature
- topic: Phylogeny
- Pubmed-ID: 25150449
- title: Arthrobacter ginsengisoli sp. nov., isolated from soil of a ginseng field.
- authors: Siddiqi MZ, Kim YJ, Hoang VA, Siddiqi MH, Huq MA, Yang DC
- journal: Arch Microbiol
- DOI: 10.1007/s00203-014-1025-8
- year: 2014
- mesh: Arthrobacter/classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Genes, rRNA, Lipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, *Panax, Peptidoglycan/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5128 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14002) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14002 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 77031 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID87708.1 | StrainInfo: A central database for resolving microbial strain identifiers |