Name: Glutamicibacter nicotianae DSM 20579
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7525

Type strain:

Species: Glutamicibacter nicotianae

Culture col. no.: DSM 20579, ATCC 14929, NCIB 9545, CCUG 43493, CIP 104276, CIP 82.22, JCM 1970, BCRC 12148, KCTC 3129, KCTC 3257, LMG 16159, NCIMB 9545

Strain history: CIP <- 1994, R. Ruimy, CNRS, Villefranche sur mer, France, Brevibacterium liquefaciens <- ATCC <- Shionogo and Co, Brevibacterium liquefaciens

NCBI tax ID(s): 37929 (species)

SI-ID 297021

LMG 16159, ATCC 14929, CCRC 12148, DSM 20579, JCM 1970, KCTC 3129, NCIMB 9545, CIP 104276, NCIB 9545, CIP 82.22, KCTC 3257, CCUG 43493, BCRC 12148, NCIM 2269

Special Collections

Other strains from Glutamicibacter nicotianae

Section

Glutamicibacter nicotianae DSM 20579 is an aerobe bacterium that was isolated from sewage.

aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Glutamicibacter*
	Species	**Glutamicibacter nicotianae**
	Full Scientific Name (LPSN)	Glutamicibacter nicotianae (Giovannozzi-Sermanni 1959) Busse 2016

	Synonym	Corynebacterium liquefaciens
	Synonym	Glutamicibacter mysorens
	Synonym	Brevibacterium liquefaciens
	Synonym	Arthrobacter nicotianae
	Synonym	Arthrobacter mysorens

Information on morphological and physiological properties Morphology

[Ref.: #121293]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %93.355

[Ref.: #121293]	Cell shape	rod-shaped

[Ref.: #121293]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #41913]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #41913]

Culture medium growth

[Ref.: #41913]

Culture medium composition

expand / minimize

[Ref.: #8929]

Culture medium

CORYNEBACTERIUM AGAR (DSMZ Medium 53)

[Ref.: #8929]

Culture medium growth

[Ref.: #8929]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8929]

Culture medium composition

expand / minimize

[Ref.: #121293]

Culture medium

CIP Medium 3

[Ref.: #121293]

Culture medium growth

[Ref.: #121293]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8929]	growth	30 °C
[Ref.: #41913]	growth	30 °C
[Ref.: #55896]	growth	30-37 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #121293]	growth	30-41 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #55896]	Oxygen tolerance	aerobe
[Ref.: #121293]	Oxygen tolerance	obligate aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #8929]	Name of produced compound	adenylate cyclase
[Ref.: #20216]	Name of produced compound	Adenylate cyclase

[Ref.: #8929]	Murein short key	A11.35
[Ref.: #8929]	Murein types	A4alpha L-Lys-L-Ala-L-Glu

[Ref.: #67770]

Observation

quinones: MK-8 (MK-9)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #121293]	esculin ChEBI	-	hydrolysis
[Ref.: #121293]	nitrate ChEBI	+	reduction
[Ref.: #121293]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #121293]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #121293]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #67770]	adenylate cyclase		4.6.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #121293]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121293]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #121293]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #121293]	gelatinase	+
[Ref.: #121293]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121293]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121293]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #121293]	620	not determinedn.d.	+	+	+	+	+	-	-	+	+	+	+	+	-	-	-	+	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	+	-	+	-	+	-	+	+	-	+	-	-	-	-	-	+	+	+	+	+	+	+	-	+	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121293]	7871	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	+	-	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8929]	Sample type/isolated from	sewage

[Ref.: #55896]	Sample type/isolated from	Sewage
[Ref.: #55896]	Country	Japan
[Ref.: #55896]	Country ISO 3 Code	JPN
[Ref.: #55896]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sewage

[Ref.: #121293]	Sample type/isolated from	Environment, Sewage
[Ref.: #121293]	Country	Japan
[Ref.: #121293]	Country ISO 3 Code	JPN
[Ref.: #121293]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Waste

#Wastewater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ251417 (>99% sequence identity) for Glutamicibacter from Microbeatlas

Aquatic Samples	29
Soil Samples	26
Animal Samples	63
Plant Samples	9
Total Samples	127

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8929]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121293]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Brevibacterium liquefaciens 16S rRNA gene, strain DSM 20579	AJ251417	1465	GenBank ENA	37929 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Glutamicibacter nicotianae DSM 20579	GCA_016907615	contig	GenBank ENA	37929 tax ID	*
[Ref.: #66792]	Glutamicibacter nicotianae strain DSM 20579	37929.9	wgs	PATRIC	37929 tax ID	*
[Ref.: #66792]	Corynebacterium liquefaciens DSM 20579	2893596632	draft	JGI IMG/M	37929 tax ID	*

[Ref.: #8929]

GC-content

62.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Glutamicibacter nicotianae strain DSM 20579 PATRIC: 37929.9
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Glutamicibacter nicotianae strain DSM 20579 PATRIC: 37929.9
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	93.355	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.41	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	76.897	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.059	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93.5	no

Availability in culture collections External links

[Ref.: #8929]

Culture collection no.

DSM 20579, ATCC 14929, NCIB 9545, CCUG 43493, CIP 104276, CIP 82.22, JCM 1970, BCRC 12148, KCTC 3129, KCTC 3257, LMG 16159, NCIMB 9545

[Ref.: #76970]

SI-ID 297021

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Brevibacterium liquefaciens Okabayashi and Masuo 1960 as Arthrobacter nicotianae Giovannozzi-Sermanni 1959.	Gelsomino R, Vancanneyt M, Swings J	Int J Syst Evol Microbiol	10.1099/ijs.0.02886-0	2004	*
Phylogeny	Taxonomic Studies on Arthrobacter nicotianae and Related Taxa: Description of Arthrobacter uratoxydans sp. nov. and Arthrobacter sulfureus sp. nov. and Reclassification of Brevibacterium protophormiae as Arthrobacter protophormiae comb. nov.	Stackebrandt E, Fowler VJ, Fiedler F, Seiler H	Syst Appl Microbiol	10.1016/S0723-2020(83)80005-8	1983	*
Enzymology	Mechanism of the adenylate cyclase reaction. Stereochemistry of the reaction catalyzed by the enzyme from Brevibacterium liquefaciens.	Gerlt JA, Coderre JA, Wolin MS	J Biol Chem	S0021-9258(19)86171-9	1980	*
Metabolism	Formation of adenosine cyclic 3',5'-phosphate by nonproliferating cells and cell-free extract of Brevibacterium liquefaciens.	Ide M, Yoshimoto A, Okabayashi T	J Bacteriol	10.1128/jb.94.2.317-322.1967	1967	*

References

#8929

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20579

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41913 ; Curators of the CIP;
#55896 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 43493

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76970

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297021.1 )

#121293 Collection of Institut Pasteur ; Curators of the CIP; CIP 104276
* These data were automatically processed and therefore are not curated

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Glutamicibacter nicotianae strain DSM 20579

Glutamicibacter nicotianae strain DSM 20579

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