Glutamicibacter nicotianae 94 is an aerobe bacterium that was isolated from Air of tobacco warehouses.
aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Micrococcales |
| Family Micrococcaceae |
| Genus Glutamicibacter |
| Species Glutamicibacter nicotianae |
| Full scientific name Glutamicibacter nicotianae (Giovannozzi-Sermanni 1959) Busse 2016 |
| Synonyms (5) |
| BacDive ID | Other strains from Glutamicibacter nicotianae (2) | Type strain |
|---|---|---|
| 7525 | G. nicotianae DSM 20579, ATCC 14929, NCIB 9545, CCUG 43493, ... | |
| 161548 | G. nicotianae JCM 1487 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 18623 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 18623 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 18623 | ISP 4 | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |||
| 18623 | ISP 5 | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |||
| 18623 | ISP 6 | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 18623 | ISP 7 | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 41912 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 8548 | CORYNEBACTERIUM AGAR (DSMZ Medium 53) | Medium recipe at MediaDive | Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water | ||
| 121292 | CIP Medium 3 | Medium recipe at CIP |
| 47855 | Oxygen toleranceaerobe |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 99.866 |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 8548 | A11.35 | A4alpha L-Lys-L-Ala-L-Glu |
| 67770 | Observationquinones: MK-8, MK-9 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68379 | 17634 ChEBI | D-glucose | - | fermentation | from API Coryne |
| 68379 | 16899 ChEBI | D-mannitol | - | fermentation | from API Coryne |
| 68379 | 16988 ChEBI | D-ribose | - | fermentation | from API Coryne |
| 68379 | 65327 ChEBI | D-xylose | - | fermentation | from API Coryne |
| 68379 | 4853 ChEBI | esculin | - | hydrolysis | from API Coryne |
| 68379 | 28087 ChEBI | glycogen | - | fermentation | from API Coryne |
| 68379 | 17716 ChEBI | lactose | - | fermentation | from API Coryne |
| 68379 | 17306 ChEBI | maltose | - | fermentation | from API Coryne |
| 68379 | 16199 ChEBI | urea | - | hydrolysis | from API Coryne |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | + | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68379 | alpha-glucosidase | + | 3.2.1.20 | from API Coryne |
| 68382 | alpha-mannosidase | + | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68379 | beta-galactosidase | - | 3.2.1.23 | from API Coryne |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68379 | beta-glucosidase | - | 3.2.1.21 | from API Coryne |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68379 | beta-glucuronidase | - | 3.2.1.31 | from API Coryne |
| 68379 | catalase | + | 1.11.1.6 | from API Coryne |
| 68382 | cystine arylamidase | + | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | + | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API Coryne |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 | from API Coryne |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 68379 | urease | - | 3.5.1.5 | from API Coryne |
| 68382 | valine arylamidase | + | from API zym |
| @ref | Reduction of nitrateNIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | Control fermentationControl | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG | CAT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18623 | - | - | + | - | - | - | + | - | - | - | + | not determinedn.d. | - | - | - | - | - | - | + | - | not determinedn.d. | |
| 47855 | + | + | + | + | - | - | + | - | - | - | - | - | not determinedn.d. | - | - | - | - | - | - | - | + |
Global distribution of 16S sequence X80739 (>99% sequence identity) for Glutamicibacter from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 124043 | ASM4242918v1 assembly for Glutamicibacter nicotianae JCM 1333 | scaffold | 37929 | 73.74 | |||
| 124043 | ASM3953507v1 assembly for Glutamicibacter nicotianae JCM 1333 | contig | 37929 | 70.52 | |||
| 67770 | ASM653952v1 assembly for Glutamicibacter nicotianae NBRC 14234 | contig | 37929 | 68.73 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Arthrobacter nicotianae partial 16S rRNA gene, type strain CIP 82.107T | AM411118 | 174 | 37929 | ||
| 20218 | A.nicotianae 16S rDNA | X80739 | 1472 | 37929 | ||
| 124043 | Glutamicibacter nicotianae strain NBRC 14234(T) 16S ribosomal RNA gene, partial sequence. | OR966873 | 1160 | 37929 | ||
| 124043 | Glutamicibacter nicotianae strain JCM 1333 16S ribosomal RNA gene, partial sequence. | MT760349 | 1350 | 37929 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 75.01 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 95.16 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 59.50 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.87 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 93.85 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 98.72 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 72.67 | no |
| 125438 | aerobic | aerobicⓘ | yes | 89.36 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.50 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 92.10 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| An efficient direct screening system for microorganisms that activate plant immune responses based on plant-microbe interactions using cultured plant cells. | Kurokawa M, Nakano M, Kitahata N, Kuchitsu K, Furuya T. | Sci Rep | 10.1038/s41598-021-86560-0 | 2021 | ||
| Biogenic Silver Nanoparticles Produced by Soil Rare Actinomycetes and Their Significant Effect on Aspergillus-derived mycotoxins. | Abd El-Ghany MN, Hamdi SA, Korany SM, Elbaz RM, Emam AN, Farahat MG. | Microorganisms | 10.3390/microorganisms11041006 | 2023 | ||
| Genetics | Virulent Phages Isolated from a Smear-Ripened Cheese Are Also Detected in Reservoirs of the Cheese Factory. | Paillet T, Lossouarn J, Figueroa C, Midoux C, Rue O, Petit MA, Dugat-Bony E. | Viruses | 10.3390/v14081620 | 2022 | |
| Lithium recovery from waste aluminum electrolyte via bioleaching: Comparative insights into acidic and alkaline pathways using Aspergillus niger and Glutamicibacter nicotianae. | Kordloo M, Boroumand Z, Abdollahi H, Rezaei A, Ghorbani Y, Solgi A. | Waste Manag | 10.1016/j.wasman.2025.115043 | 2025 | ||
| Glutamicibacter nicotianae AT6: A new strain for the efficient biodegradation of tilmicosin. | Li H, Zhou H, Fan L, Meng L, Zhao Y, Zhao L, Wang B. | J Environ Sci (China) | 10.1016/j.jes.2023.07.009 | 2024 | ||
| The antibiofilm potential of a heteropolysaccharide produced and characterized from the isolated marine bacterium Glutamicibacter nicotianae BPM30. | Trilokesh C, Harish BS, Uppuluri KB. | Prep Biochem Biotechnol | 10.1080/10826068.2023.2209886 | 2024 | ||
| Acinetobacter tandoii ZM06 Assists Glutamicibacter nicotianae ZM05 in Resisting Cadmium Pressure to Preserve Dipropyl Phthalate Biodegradation. | Wang X, Shen S, Wu H, Wang H, Wang L, Lu Z. | Microorganisms | 10.3390/microorganisms9071417 | 2021 | ||
| Enzymology | Kinetics of Phenol Biodegradation by Heavy Metal Tolerant Rhizobacteria Glutamicibacter nicotianae MSSRFPD35 From Distillery Effluent Contaminated Soils. | Duraisamy P, Sekar J, Arunkumar AD, Ramalingam PV. | Front Microbiol | 10.3389/fmicb.2020.01573 | 2020 | |
| Exploring the Potential of Halotolerant Actinomycetes from Rann of Kutch, India: A Study on the Synthesis, Characterization, and Biomedical Applications of Silver Nanoparticles. | Dayma P, Choudhary N, Ali D, Alarifi S, Dudhagara P, Luhana K, Yadav VK, Patel A, Patel R. | Pharmaceuticals (Basel) | 10.3390/ph17060743 | 2024 | ||
| Airborne bacteria in show caves from Southern Spain. | Dominguez-Monino I, Jurado V, Rogerio-Candelera MA, Hermosin B, Saiz-Jimenez C. | Microb Cell | 10.15698/mic2021.10.762 | 2021 | ||
| Bacteria Isolated From the Antarctic Sponge Iophon sp. Reveals Mechanisms of Symbiosis in Sporosarcina, Cellulophaga, and Nesterenkonia. | Moreno-Pino M, Ugalde JA, Valdes JH, Rodriguez-Marconi S, Parada-Pozo G, Trefault N. | Front Microbiol | 10.3389/fmicb.2021.660779 | 2021 | ||
| Metabolism | Distribution and Evolutionary History of Sialic Acid Catabolism in the Phylum Actinobacteria. | Li Y, Huang Y. | Microbiol Spectr | 10.1128/spectrum.02380-21 | 2022 | |
| Transcriptome | Diversity of Bacterial Microbiota of Coastal Halophyte Limonium sinense and Amelioration of Salinity Stress Damage by Symbiotic Plant Growth-Promoting Actinobacterium Glutamicibacter halophytocola KLBMP 5180. | Qin S, Feng WW, Zhang YJ, Wang TT, Xiong YW, Xing K. | Appl Environ Microbiol | 10.1128/aem.01533-18 | 2018 | |
| Utilization of Phenol as Carbon Source by the Thermoacidophilic Archaeon Saccharolobus solfataricus P2 Is Limited by Oxygen Supply and the Cellular Stress Response. | Wolf J, Koblitz J, Albersmeier A, Kalinowski J, Siebers B, Schomburg D, Neumann-Schaal M. | Front Microbiol | 10.3389/fmicb.2020.587032 | 2020 | ||
| Green biologically synthesized metal nanoparticles: biological applications, optimizations and future prospects. | Morgan RN, Aboshanab KM. | Future Sci OA | 10.2144/fsoa-2023-0196 | 2024 | ||
| Enzymology | Biotechnological Potential of Bacteria Isolated from the Sea Cucumber Holothuria leucospilota and Stichopus vastus from Lampung, Indonesia. | Wibowo JT, Kellermann MY, Versluis D, Putra MY, Murniasih T, Mohr KI, Wink J, Engelmann M, Praditya DF, Steinmann E, Schupp PJ. | Mar Drugs | 10.3390/md17110635 | 2019 | |
| Metabolism | Light-inducible carotenoid production controlled by a MarR-type regulator in Corynebacterium glutamicum. | Sumi S, Suzuki Y, Matsuki T, Yamamoto T, Tsuruta Y, Mise K, Kawamura T, Ito Y, Shimada Y, Watanabe E, Watanabe S, Toriyabe M, Takano Shiratori H, Ueda K, Takano H. | Sci Rep | 10.1038/s41598-019-49384-7 | 2019 | |
| Phylogeny | Phylogenomic Analysis Reveals That Arthrobacter mysorens Nand and Rao 1972 (Approved Lists 1980) and Glutamicibacter mysorens Busse 2016 are Later Heterotypic Synonyms of Arthrobacter nicotianae Giovannozzi-Sermanni 1959 (Approved Lists 1980) and Glutamicibacter nicotianae Busse 2016. | Deb S, Das L, Das SK | Curr Microbiol | 10.1007/s00284-020-02176-z | 2020 | |
| Rapid physiological characterization of microorganisms by biosensor technique. | Riedel K, Kunze G | Microbiol Res | 10.1016/S0944-5013(97)80033-X | 1997 | ||
| Phylogeny | Glutamicibacter halophytocola sp. nov., an endophytic actinomycete isolated from the roots of a coastal halophyte, Limonium sinense. | Feng WW, Wang TT, Bai JL, Ding P, Xing K, Jiang JH, Peng X, Qin S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001775 | 2017 |
| #8548 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20123 |
| #18623 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20216 | Curators of the JMRC: Jena Microbial Resource Collection (JMRC): |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #41912 | ; Curators of the CIP; |
| #47855 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 23842 |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68379 | Automatically annotated from API Coryne . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #121292 | Collection of Institut Pasteur ; Curators of the CIP; CIP 82.107 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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