Name: Glutamicibacter nicotianae 94
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7524

Type strain:

Species: Glutamicibacter nicotianae

Strain Designation: 94

Culture col. no.: CCUG 23842, DSM 20123, ATCC 15236, CCM 1648, NCIB 9458, JCM 1333, BCRC 11219, CDA 883, CGMCC 1.1895, CIP 82.107, HAMBI 1859, IAM 12342, IFO 14234, IMET 10353, KCTC 3382, LMG 16305, MTCC 21, NBRC 14234, NCDO 2404, NCIMB 9458, NRIC 0153, VKM Ac-1113, VKM Ac-1127

Strain history: CIP <- 1982, ATCC <- G. Giovannozzi-Sermanni: strain 9-4

NCBI tax ID(s): 37929 (species)

SI-ID 10066

LMG 16305, ATCC 15236, CCM 1648, DSM 20123, NCIB 9458, CCUG 23842, IAM 12342, IMET 10353, JCM 1333, CCRC 11219, IFO 14234, NCIMB 9458, NCDO 2404, VKM Ac-1127, VKM Ac-1113, CIP 82.107, KCTC 3382, AS 1.1895, NBRC 14234, HAMBI 1859, BCRC 11219, NCIM 2460, CDBB 546, CGMCC 1.1895, VTT E-072705

Special Collections

Other strains from Glutamicibacter nicotianae

Section

Glutamicibacter nicotianae 94 is an aerobe bacterium that was isolated from Air of tobacco warehouses.

aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Glutamicibacter*
	Species	**Glutamicibacter nicotianae**
	Full Scientific Name (LPSN)	Glutamicibacter nicotianae (Giovannozzi-Sermanni 1959) Busse 2016

	Synonym	Corynebacterium liquefaciens
	Synonym	Glutamicibacter mysorens
	Synonym	Brevibacterium liquefaciens
	Synonym	Arthrobacter nicotianae
	Synonym	Arthrobacter mysorens

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %93.847

[Ref.: #69480]	Motility	no Confidence in %92.1

[Ref.: #18623]	Colony color	Colorless
[Ref.: #18623]	Incubation period	10-14 days
[Ref.: #18623]	Cultivation medium used	ISP 2

[Ref.: #18623]	Colony color	Colorless
[Ref.: #18623]	Incubation period	10-14 days
[Ref.: #18623]	Cultivation medium used	ISP 3

[Ref.: #18623]	Colony color	Ivory (1014)
[Ref.: #18623]	Incubation period	10-14 days
[Ref.: #18623]	Cultivation medium used	ISP 4

[Ref.: #18623]	Colony color	Colorless
[Ref.: #18623]	Incubation period	10-14 days
[Ref.: #18623]	Cultivation medium used	ISP 5

[Ref.: #18623]	Colony color	Ivory (1014)
[Ref.: #18623]	Incubation period	10-14 days
[Ref.: #18623]	Cultivation medium used	ISP 6

[Ref.: #18623]	Colony color	Colorless
[Ref.: #18623]	Incubation period	10-14 days
[Ref.: #18623]	Cultivation medium used	ISP 7

[Ref.: #18623]	Multicellular complex forming ability	no
[Ref.: #18623]	Medium Name (multicellularity)	ISP 2

[Ref.: #18623]	Multicellular complex forming ability	no
[Ref.: #18623]	Medium Name (multicellularity)	ISP 3

[Ref.: #18623]	Multicellular complex forming ability	no
[Ref.: #18623]	Medium Name (multicellularity)	ISP 4

[Ref.: #18623]	Multicellular complex forming ability	no
[Ref.: #18623]	Medium Name (multicellularity)	ISP 5

[Ref.: #18623]	Multicellular complex forming ability	no
[Ref.: #18623]	Medium Name (multicellularity)	ISP 6

[Ref.: #18623]	Multicellular complex forming ability	no
[Ref.: #18623]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18623]

Culture medium

ISP 2

[Ref.: #18623]

Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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[Ref.: #18623]

Culture medium

ISP 5

[Ref.: #18623]

Culture medium growth

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Culture medium composition

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[Ref.: #18623]

Culture medium

ISP 6

[Ref.: #18623]

Culture medium growth

[Ref.: #18623]

Culture medium composition

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[Ref.: #18623]

Culture medium

ISP 7

[Ref.: #18623]

Culture medium growth

[Ref.: #18623]

Culture medium composition

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[Ref.: #41912]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #41912]

Culture medium growth

[Ref.: #41912]

Culture medium composition

expand / minimize

[Ref.: #8548]

Culture medium

CORYNEBACTERIUM AGAR (DSMZ Medium 53)

[Ref.: #8548]

Culture medium growth

[Ref.: #8548]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8548]

Culture medium composition

expand / minimize

[Ref.: #121292]

Culture medium

CIP Medium 3

[Ref.: #121292]

Culture medium growth

[Ref.: #121292]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8548]	growth	30 °C
[Ref.: #18623]	optimum	28 °C
[Ref.: #41912]	growth	30 °C
[Ref.: #47855]	growth	26 °C
[Ref.: #67770]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #47855]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #8548]	Murein short key	A11.35
[Ref.: #8548]	Murein types	A4alpha L-Lys-L-Ala-L-Glu

[Ref.: #67770]

Observation

quinones: MK-8, MK-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #68379]	catalase	+	1.11.1.6	* from API Coryne
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18623]	175	-	-	+	-	-	-	+	-	-	-	+	not determinedn.d.	-	-	-	-	-	-	+	-	not determinedn.d.
[Ref.: #47855]	904	+	+	+	+	-	-	+	-	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18623]	262	not determinedn.d.	+	-	+	+	+	+	+	+	-	+	+	-	-	-	+	-	-	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Air of tobacco warehouses

[Ref.: #121292]	Sample type/isolated from	Environment, Air contaminant of tobacco warehouse
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence X80739 (>99% sequence identity) for Glutamicibacter from Microbeatlas

Aquatic Samples	29
Soil Samples	26
Animal Samples	63
Plant Samples	9
Total Samples	127

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18623]	Biosafety level	1	Hazard group
[Ref.: #8548]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121292]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Arthrobacter nicotianae partial 16S rRNA gene, type strain CIP 82.107T	AM411118	174	GenBank ENA	37929 tax ID	*
[Ref.: #20218]	A.nicotianae 16S rDNA	X80739	1472	GenBank ENA	37929 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Glutamicibacter nicotianae NBRC 14234	GCA_006539525	contig	GenBank ENA	37929 tax ID
[Ref.: #66792]	Glutamicibacter nicotianae strain NBRC 14234	37929.5	wgs	PATRIC	37929 tax ID	*

[Ref.: #8548]	GC-content	60.2 mol%
[Ref.: #67770]	GC-content	64 mol%	Buoyant density centrifugation (BD)
[Ref.: #67770]	GC-content	60.2 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Glutamicibacter nicotianae strain NBRC 14234 PATRIC: 37929.5
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Glutamicibacter nicotianae strain NBRC 14234 PATRIC: 37929.5
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	93.847	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.72	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	72.666	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.356	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92.1	no

Availability in culture collections External links

[Ref.: #8548]

Culture collection no.

CCUG 23842, DSM 20123, ATCC 15236, CCM 1648, NCIB 9458, JCM 1333, BCRC 11219, CDA 883, CGMCC 1.1895, CIP 82.107, HAMBI 1859, IAM 12342, IFO 14234, IMET 10353, KCTC 3382, LMG 16305, MTCC 21, NBRC 14234, NCDO 2404, NCIMB 9458, NRIC 0153, VKM Ac-1113, VKM Ac-1127

[Ref.: #76969]

SI-ID 10066

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenomic Analysis Reveals That Arthrobacter mysorens Nand and Rao 1972 (Approved Lists 1980) and Glutamicibacter mysorens Busse 2016 are Later Heterotypic Synonyms of Arthrobacter nicotianae Giovannozzi-Sermanni 1959 (Approved Lists 1980) and Glutamicibacter nicotianae Busse 2016.	Deb S, Das L, Das SK	Curr Microbiol	10.1007/s00284-020-02176-z	2020	*
Phylogeny	Glutamicibacter halophytocola sp. nov., an endophytic actinomycete isolated from the roots of a coastal halophyte, Limonium sinense.	Feng WW, Wang TT, Bai JL, Ding P, Xing K, Jiang JH, Peng X, Qin S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001775	2017	*
	Rapid physiological characterization of microorganisms by biosensor technique.	Riedel K, Kunze G	Microbiol Res	10.1016/S0944-5013(97)80033-X	1997	*

References

#8548

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20123

#18623

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41912 ; Curators of the CIP;
#47855 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 23842

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76969

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID10066.1 )

#121292 Collection of Institut Pasteur ; Curators of the CIP; CIP 82.107
* These data were automatically processed and therefore are not curated

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Glutamicibacter nicotianae strain NBRC 14234

Glutamicibacter nicotianae strain NBRC 14234

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