Paenarthrobacter histidinolovorans DSM 20115 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from soil.
Gram-positive aerobe mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Micrococcales |
| Family Micrococcaceae |
| Genus Paenarthrobacter |
| Species Paenarthrobacter histidinolovorans |
| Full scientific name Paenarthrobacter histidinolovorans (Adams 1954) Busse 2016 |
| Synonyms (1) |
| BacDive ID | Other strains from Paenarthrobacter histidinolovorans (1) | Type strain |
|---|---|---|
| 102935 | P. histidinolovorans STH00444(ZIMET), HD9, HKI 0444, KACC 20266 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 18419 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 18419 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 18419 | ISP 6 | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 41903 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 8540 | CORYNEBACTERIUM AGAR (DSMZ Medium 53) | Medium recipe at MediaDive | Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water | ||
| 119924 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 8540 | A11.17 | A3alpha L-Lys-L-Ala-L-Thr-L-Ala |
| 67770 | Observationquinones: MK-9(H2) |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 18419 | 22599 ChEBI | arabinose | + | ||
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 18419 | 62968 ChEBI | cellulose | - | ||
| 119924 | 16947 ChEBI | citrate | + | carbon source | |
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 68379 | 17634 ChEBI | D-glucose | + | fermentation | from API Coryne |
| 68379 | 16899 ChEBI | D-mannitol | + | fermentation | from API Coryne |
| 68379 | 16988 ChEBI | D-ribose | + | fermentation | from API Coryne |
| 68379 | 65327 ChEBI | D-xylose | - | fermentation | from API Coryne |
| 68379 | 4853 ChEBI | esculin | + | hydrolysis | from API Coryne |
| 119924 | 4853 ChEBI | esculin | + | hydrolysis | |
| 18419 | 28757 ChEBI | fructose | + | ||
| 68379 | 5291 ChEBI | gelatin | + | hydrolysis | from API Coryne |
| 68368 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20E |
| 18419 | 17234 ChEBI | glucose | + | ||
| 68379 | 28087 ChEBI | glycogen | + | fermentation | from API Coryne |
| 119924 | 606565 ChEBI | hippurate | + | hydrolysis | |
| 68379 | 17716 ChEBI | lactose | + | fermentation | from API Coryne |
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 68379 | 17306 ChEBI | maltose | + | fermentation | from API Coryne |
| 18419 | 29864 ChEBI | mannitol | + | ||
| 18419 | 17268 ChEBI | myo-inositol | + | ||
| 68379 | 17632 ChEBI | nitrate | + | reduction | from API Coryne |
| 119924 | 17632 ChEBI | nitrate | - | reduction | |
| 119924 | 17632 ChEBI | nitrate | - | respiration | |
| 119924 | 16301 ChEBI | nitrite | - | reduction | |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 18419 | 16634 ChEBI | raffinose | + | ||
| 18419 | 26546 ChEBI | rhamnose | + | ||
| 18419 | 17992 ChEBI | sucrose | + | ||
| 68379 | 17992 ChEBI | sucrose | + | fermentation | from API Coryne |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68379 | 16199 ChEBI | urea | + | hydrolysis | from API Coryne |
| 68368 | 16199 ChEBI | urea | + | hydrolysis | from API 20E |
| 18419 | 18222 ChEBI | xylose | + |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 119924 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 119924 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68379 | alkaline phosphatase | - | 3.1.3.1 | from API Coryne |
| 68382 | alpha-fucosidase | + | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68379 | alpha-glucosidase | + | 3.2.1.20 | from API Coryne |
| 68382 | alpha-mannosidase | + | 3.2.1.24 | from API zym |
| 119924 | amylase | + | ||
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 119924 | beta-galactosidase | + | 3.2.1.23 | |
| 68379 | beta-galactosidase | + | 3.2.1.23 | from API Coryne |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68379 | beta-glucosidase | + | 3.2.1.21 | from API Coryne |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68379 | beta-glucuronidase | + | 3.2.1.31 | from API Coryne |
| 119924 | caseinase | + | 3.4.21.50 | |
| 119924 | catalase | + | 1.11.1.6 | |
| 119924 | DNase | - | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 119924 | gamma-glutamyltransferase | + | 2.3.2.2 | |
| 119924 | gelatinase | + | ||
| 68379 | gelatinase | + | from API Coryne | |
| 68368 | gelatinase | + | from API 20E | |
| 119924 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 119924 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 119924 | lysine decarboxylase | - | 4.1.1.18 | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68379 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API Coryne |
| 119924 | ornithine decarboxylase | - | 4.1.1.17 | |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 119924 | oxidase | - | ||
| 119924 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 119924 | protease | + | ||
| 68379 | pyrazinamidase | + | 3.5.1.B15 | from API Coryne |
| 68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 | from API Coryne |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 119924 | tryptophan deaminase | - | ||
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 119924 | tween esterase | - | ||
| 119924 | urease | - | 3.5.1.5 | |
| 68379 | urease | + | 3.5.1.5 | from API Coryne |
| 68368 | urease | + | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | + | from API zym |
Global distribution of 16S sequence X83406 (>99% sequence identity) for Paenarthrobacter from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM1464759v1 assembly for Paenarthrobacter histidinolovorans JCM 2520 | contig | 43664 | 74.88 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 67770 | 62.6 | high performance liquid chromatography (HPLC) |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 73.70 | no |
| 125439 | motility | BacteriaNetⓘ | no | 82.30 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 92.00 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 95.00 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 89.48 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 98.66 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 63.13 | no |
| 125438 | aerobic | aerobicⓘ | yes | 90.58 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 99.00 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 91.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Metabolism | Identification of levoglucosan degradation pathways in bacteria and sequence similarity network analysis. | Kaur A, Scott NE, Herisse M, Goddard-Borger ED, Pidot S, Williams SJ. | Arch Microbiol | 10.1007/s00203-023-03506-y | 2023 | |
| Paenarthrobacter sp. GOM3 Is a Novel Marine Species With Monoaromatic Degradation Relevance. | Rosas-Diaz J, Escobar-Zepeda A, Adaya L, Rojas-Vargas J, Cuervo-Amaya DH, Sanchez-Reyes A, Pardo-Lopez L. | Front Microbiol | 10.3389/fmicb.2021.713702 | 2021 | ||
| Understanding the sugar beet holobiont for sustainable agriculture. | Wolfgang A, Temme N, Tilcher R, Berg G. | Front Microbiol | 10.3389/fmicb.2023.1151052 | 2023 |
| #8540 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20115 |
| #18419 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #41903 | ; Curators of the CIP; |
| #47869 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 23888 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68379 | Automatically annotated from API Coryne . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #119924 | Collection of Institut Pasteur ; Curators of the CIP; CIP 106988 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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https://doi.org/10.13145/bacdive7523.20251217.10
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BacDive in 2025: the core database for prokaryotic strain data