Name: Microbacterium hatanonis FCC-01
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7432

Type strain:

Species: Microbacterium hatanonis

Strain Designation: FCC-01

Culture col. no.: DSM 19179, JCM 14558

Strain history: M. A. Bakir and Y. Benno FCC-01.

NCBI tax ID(s): 404366 (species)

SI-ID 343454

DSM 19179, JCM 14558

Special Collections

Section

Microbacterium hatanonis FCC-01 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from hairspray.

Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Microbacterium*
	Species	**Microbacterium hatanonis**
	Full Scientific Name (LPSN)	Microbacterium hatanonis Bakir et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32226]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %90.287

[Ref.: #32226]	Cell length	1.7 µm

[Ref.: #32226]	Cell width	0.8 µm

[Ref.: #32226]	Cell shape	rod-shaped

[Ref.: #32226]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.5

[Ref.: #18330]	Colony color	Zinc yellow (1018)
[Ref.: #18330]	Incubation period	10-14 days
[Ref.: #18330]	Cultivation medium used	ISP 2

[Ref.: #18330]	Colony color	Zinc yellow (1018)
[Ref.: #18330]	Incubation period	10-14 days
[Ref.: #18330]	Cultivation medium used	ISP 3

[Ref.: #18330]	Colony color	Zinc yellow (1018)
[Ref.: #18330]	Incubation period	10-14 days
[Ref.: #18330]	Cultivation medium used	ISP 4

[Ref.: #18330]	Colony color	Zinc yellow (1018)
[Ref.: #18330]	Incubation period	10-14 days
[Ref.: #18330]	Cultivation medium used	ISP 5

[Ref.: #18330]	Colony color	Zinc yellow (1018)
[Ref.: #18330]	Incubation period	10-14 days
[Ref.: #18330]	Cultivation medium used	ISP 6

[Ref.: #18330]	Colony color	Zinc yellow (1018)
[Ref.: #18330]	Incubation period	10-14 days
[Ref.: #18330]	Cultivation medium used	ISP 7

[Ref.: #32226]

Pigment production

yes

[Ref.: #18330]	Multicellular complex forming ability	no
[Ref.: #18330]	Medium Name (multicellularity)	ISP 2

[Ref.: #18330]	Multicellular complex forming ability	no
[Ref.: #18330]	Medium Name (multicellularity)	ISP 3

[Ref.: #18330]	Multicellular complex forming ability	no
[Ref.: #18330]	Medium Name (multicellularity)	ISP 4

[Ref.: #18330]	Multicellular complex forming ability	no
[Ref.: #18330]	Medium Name (multicellularity)	ISP 5

[Ref.: #18330]	Multicellular complex forming ability	no
[Ref.: #18330]	Medium Name (multicellularity)	ISP 6

[Ref.: #18330]	Multicellular complex forming ability	no
[Ref.: #18330]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7951]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #7951]

Culture medium growth

[Ref.: #7951]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7951]

Culture medium composition

expand / minimize

[Ref.: #18330]

Culture medium

ISP 2

[Ref.: #18330]

Culture medium growth

[Ref.: #18330]

Culture medium composition

expand / minimize

[Ref.: #18330]

Culture medium

ISP 3

[Ref.: #18330]

Culture medium growth

[Ref.: #18330]

Culture medium composition

expand / minimize

[Ref.: #18330]

Culture medium

ISP 4

[Ref.: #18330]

Culture medium growth

[Ref.: #18330]

Culture medium composition

expand / minimize

[Ref.: #18330]

Culture medium

ISP 5

[Ref.: #18330]

Culture medium growth

[Ref.: #18330]

Culture medium composition

expand / minimize

[Ref.: #18330]

Culture medium

ISP 6

[Ref.: #18330]

Culture medium growth

[Ref.: #18330]

Culture medium composition

expand / minimize

[Ref.: #18330]

Culture medium

ISP 7

[Ref.: #18330]

Culture medium growth

[Ref.: #18330]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7951]	growth	28 °C
[Ref.: #18330]	optimum	28 °C
[Ref.: #32226]	growth	10-37 °C
[Ref.: #32226]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #32226]			optimum	7
[Ref.: #32226]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32226]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32226]		NaCl		growth	0-2	%

[Ref.: #67770]

Observation

quinones: MK-12, MK-11, MK-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32226]	arabinose ChEBI	+	carbon source
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #32226]	esculin ChEBI	+	hydrolysis
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #32226]	glucose ChEBI	+	carbon source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #32226]	malate ChEBI	+	carbon source
[Ref.: #32226]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #32226]	mannitol ChEBI	+	carbon source
[Ref.: #32226]	mannose ChEBI	+	carbon source
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32226]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #32226]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym, API Coryne
[Ref.: #32226]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18330]	24	-	-	+	-	+	+	+	-	+	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18330]	40	not determinedn.d.	-	+	+	-	+	+	-	-	-	-	-	+	+	+	+	+	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7951]	Sample type/isolated from	hairspray
[Ref.: #7951]	Geographic location (country and/or sea, region)	Wakoshi, Saitama
[Ref.: #7951]	Country	Japan
[Ref.: #7951]	Country ISO 3 Code	JPN
[Ref.: #7951]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Hairspray
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Industrial

#Engineered product

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18330]	Biosafety level	1
[Ref.: #7951]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7951]	Microbacterium hatanonis gene for 16S rRNA, partial sequence	AB274908	1484	GenBank ENA	404366 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Microbacterium hatanonis JCM14558	GCA_008017415	contig	GenBank ENA	404366 tax ID
[Ref.: #66792]	Microbacterium hatanonis strain JCM14558	404366.3	wgs	PATRIC	404366 tax ID	*

[Ref.: #7951]	GC-content	69 mol%
[Ref.: #67770]	GC-content	69 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Microbacterium hatanonis strain JCM14558 PATRIC: 404366.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbacterium hatanonis strain JCM14558 PATRIC: 404366.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.287	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.172	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	79.4	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.599	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.5	yes

Availability in culture collections External links

[Ref.: #7951]

Culture collection no.

DSM 19179, JCM 14558

[Ref.: #76881]

SI-ID 343454

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacterium caowuchunii sp. nov. and Microbacterium lushaniae sp. nov., isolated from plateau pika (Ochotona curzoniae) on the Qinghai-Tibet Plateau of PR China.	Tian Z, Yang J, Lai XH, Pu J, Jin D, Luo X, Huang Y, Li J, Zhang G, Wang S, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004662	2021	*
Phylogeny	Microbacterium wangchenii sp. nov., isolated from faeces of Tibetan gazelles (Procapra picticaudata) on the Qinghai-Tibet Plateau.	Dong K, Yang J, Lu S, Pu J, Lai XH, Jin D, Li J, Zhang G, Wang X, Zhang S, Lei W, Ren Z, Wu X, Huang Y, Wang S, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003912	2020	*
Phylogeny	Microbacterium hatanonis sp. nov., isolated as a contaminant of hairspray.	Bakir MA, Kudo T, Benno Y	Int J Syst Evol Microbiol	10.1099/ijs.0.65160-0	2008	*

References

#7951

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19179

#18330

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32226

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28468 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76881

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID343454.1 )

#28468

IJSEM 654 2008 ( DOI 10.1099/ijs.0.65160-0 , PubMed 18319473 )

* These data were automatically processed and therefore are not curated

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Microbacterium hatanonis strain JCM14558

Microbacterium hatanonis strain JCM14558

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