Name: Microbacterium aoyamense KV-492
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7431

Type strain:

Species: Microbacterium aoyamense

Strain Designation: KV-492

Culture col. no.: DSM 19461, NBRC 101280, NRRL B-24451, JCM 14900, CIP 109366, NCIMB 14561

Strain history: NBRC 101280 <-- S. ?mura KV-492.

NCBI tax ID(s): 344166 (species)

SI-ID 295942

NRRL B-24451, NBRC 101280, CIP 109366, DSM 19461, JCM 14900

Section

Microbacterium aoyamense KV-492 is a mesophilic bacterium that was isolated from soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Microbacterium*
	Species	**Microbacterium aoyamense**
	Full Scientific Name (LPSN)	Microbacterium aoyamense Kageyama et al. 2006

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8103]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #8103]

Culture medium growth

[Ref.: #8103]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8103]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8103]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #8103]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-13, MK-14, MK-12

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8103]	Sample type/isolated from	soil
[Ref.: #8103]	Geographic location (country and/or sea, region)	Aoyamareien, Tokyo
[Ref.: #8103]	Country	Japan
[Ref.: #8103]	Country ISO 3 Code	JPN
[Ref.: #8103]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil form a cemetery in Aoyama
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tokyo
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8103]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8103]	Microbacterium aoyamense gene for 16S rRNA, partial sequence	AB234028	1443	ENA	344166 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Microbacterium aoyamense DSM 19461	GCA_023155855	contig	GenBank	344166 tax ID	*

[Ref.: #8103]	GC-content	69 mol%
[Ref.: #67770]	GC-content	69 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbacterium aoyamense DSM 19461 NCBI: GCA_023155855.1
[Ref.: #69480]	flagellated	no	93.014	no
[Ref.: #69480]	gram-positive	yes	92.007	no
[Ref.: #69480]	anaerobic	no	99.535	no
[Ref.: #69480]	aerobic	yes	95.136	no
[Ref.: #69480]	halophile	no	92.274	no
[Ref.: #69480]	spore-forming	no	92.628	no
[Ref.: #69480]	motile	yes	51.277	no
[Ref.: #69480]	glucose-ferment	no	90.762	no
[Ref.: #69480]	thermophile	no	99.246	no
[Ref.: #69480]	glucose-util	yes	87.158	no

Availability in culture collections External links

[Ref.: #8103]

Culture collection no.

DSM 19461, NBRC 101280, NRRL B-24451, JCM 14900, CIP 109366, NCIMB 14561

[Ref.: #76880]

SI-ID 295942

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacterium invictum sp. nov., isolated from homemade compost.	Vaz-Moreira I, Lopes AR, Faria C, Sproer C, Schumann P, Nunes OC, Manaia CM	Int J Syst Evol Microbiol	10.1099/ijs.0.005561-0	2009	*
Phylogeny	Microbacterium deminutum sp. nov., Microbacterium pumilum sp. nov. and Microbacterium aoyamense sp. nov.	Kageyama A, Takahashi Y, Omura S	Int J Syst Evol Microbiol	10.1099/ijs.0.64236-0	2006	*
Phylogeny	Microbacterium kunmingensis sp. nov., an attached bacterium of Microcystis aeruginosa.	Xiao Y, Chen M, Chen J, Mao LN, Peng YR, Gui SS, Zhang BH	J Antibiot (Tokyo)	10.1038/s41429-022-00568-w	2022	*

References

#8103

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19461

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76880

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID295942.1 )

* These data were automatically processed and therefore are not curated

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Microbacterium aoyamense DSM 19461

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