Microbacterium aoyamense (DSM 19461, KV-492, NBRC 101280)

Name: Microbacterium aoyamense (DSM 19461, KV-492, NBRC 101280)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7431

Type strain

Strain Designation KV-492

Culture col. no. DSM 19461 KV-492 NBRC 101280 NRRL B-24451 NCIMB 14561 2 more

NCBI tax ID(s) 344166

Special Collections DSMZ JCM CIP

History DSMZ <- NRRL <- S. Omura, KV-492 JCM <-- NBRC 101280 <-- S. ?mura KV-492.

Links

Microbacterium aoyamense KV-492 is a bacterium that was isolated from soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 295942

NRRL B-24451,NBRC 101280,CIP 109366,DSM 19461,JCM 14900

@ref 20215

Last LPSN update 2026-05-29 08:26:38

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Microbacterium

Species Microbacterium aoyamense

Full scientific name Microbacterium aoyamense Kageyama et al. 2006

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	92.18

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8103	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
8103	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Observation

67770

Observationquinones: MK-13, MK-14, MK-12

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
8103	soil	Aoyamareien, Tokyo	Japan	JPN	Asia
67770	Soil form a cemetery in Aoyama	Tokyo	Japan	JPN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8103	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2315585v1 assembly for Microbacterium aoyamense DSM 19461	contig	GCA_023155855	344166.4	8046166094	344166	75.21
124043	ASM3953018v1 assembly for Microbacterium aoyamense JCM 14900	contig	GCA_039530185			344166	73.36

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8103	Microbacterium aoyamense gene for 16S rRNA, partial sequence	AB234028	1443		344166

GC content

@ref	GC-content (mol%)	Method
8103	69
67770	69	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Microbacterium aoyamense DSM 19461
NCBI: GCA_023155855.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.18	no
125438	anaerobic	anaerobicⓘ	no	97.18	no
125438	aerobic	aerobicⓘ	yes	89.31	no
125438	spore-forming	spore-formingⓘ	no	75.88	no
125438	thermophilic	thermophileⓘ	no	98.30	yes
125438	flagellated	motile2+ⓘ	no	75.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacterium invictum sp. nov., isolated from homemade compost.	Vaz-Moreira I, Lopes AR, Faria C, Sproer C, Schumann P, Nunes OC, Manaia CM	Int J Syst Evol Microbiol	10.1099/ijs.0.005561-0	2009
Phylogeny	Microbacterium deminutum sp. nov., Microbacterium pumilum sp. nov. and Microbacterium aoyamense sp. nov.	Kageyama A, Takahashi Y, Omura S	Int J Syst Evol Microbiol	10.1099/ijs.0.64236-0	2006
Phylogeny	Microbacterium kunmingensis sp. nov., an attached bacterium of Microcystis aeruginosa.	Xiao Y, Chen M, Chen J, Mao LN, Peng YR, Gui SS, Zhang BH	J Antibiot (Tokyo)	10.1038/s41429-022-00568-w	2022

References

#8103	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19461
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Microbacterium aoyamense (DSM 19461, KV-492, NBRC 101280)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_023155855

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media