Strain identifier

BacDive ID: 7431

Type strain: Yes

Species: Microbacterium aoyamense

Strain Designation: KV-492

Strain history: NBRC 101280 <-- S. ?mura KV-492.

NCBI tax ID(s): 344166 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8103

BacDive-ID: 7431

DSM-Number: 19461

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Microbacterium aoyamense KV-492 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 344166
  • Matching level: species

strain history

@refhistory
8103<- NRRL <- S. Omura, KV-492
67770NBRC 101280 <-- S. ?mura KV-492.

doi: 10.13145/bacdive7431.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Microbacterium
  • species: Microbacterium aoyamense
  • full scientific name: Microbacterium aoyamense Kageyama et al. 2006

@ref: 8103

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Microbacterium

species: Microbacterium aoyamense

full scientific name: Microbacterium aoyamense Kageyama et al. 2006

strain designation: KV-492

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 8103
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8103positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-13, MK-14, MK-12

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
8103soilAoyamareien, TokyoJapanJPNAsia
67770Soil form a cemetery in AoyamaTokyoJapanJPNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 8103
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8103
  • description: Microbacterium aoyamense gene for 16S rRNA, partial sequence
  • accession: AB234028
  • length: 1443
  • database: ena
  • NCBI tax ID: 344166

Genome sequences

  • @ref: 66792
  • description: Microbacterium aoyamense DSM 19461
  • accession: GCA_023155855
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 344166

GC content

@refGC-contentmethod
810369
6777069high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno93.014no
gram-positiveyes92.007no
anaerobicno99.535no
aerobicyes95.136no
halophileno92.274no
spore-formingno92.628no
motileyes51.277no
glucose-fermentno90.762no
thermophileno99.246no
glucose-utilyes87.158no

External links

@ref: 8103

culture collection no.: DSM 19461, NBRC 101280, NRRL B-24451, JCM 14900, CIP 109366, NCIMB 14561

straininfo link

  • @ref: 76880
  • straininfo: 295942

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16957107Microbacterium deminutum sp. nov., Microbacterium pumilum sp. nov. and Microbacterium aoyamense sp. nov.Kageyama A, Takahashi Y, Omura SInt J Syst Evol Microbiol10.1099/ijs.0.64236-02006Actinomycetales/*classification/genetics, Bacterial Typing Techniques, DNA, Bacterial/analysis, Molecular Sequence Data, RNA, Ribosomal, 16S/*analysis/geneticsGenetics
Phylogeny19567581Microbacterium invictum sp. nov., isolated from homemade compost.Vaz-Moreira I, Lopes AR, Faria C, Sproer C, Schumann P, Nunes OC, Manaia CMInt J Syst Evol Microbiol10.1099/ijs.0.005561-02009Actinomycetales/*classification/genetics/*isolation & purification/physiology, Aerobiosis, Base Composition, Catalase/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/metabolism, Peptidoglycan/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Temperature, Vitamin K 2/analysisMetabolism
Phylogeny36167780Microbacterium kunmingensis sp. nov., an attached bacterium of Microcystis aeruginosa.Xiao Y, Chen M, Chen J, Mao LN, Peng YR, Gui SS, Zhang BHJ Antibiot (Tokyo)10.1038/s41429-022-00568-w2022RNA, Ribosomal, 16S/genetics, *Microcystis, Microbacterium, DNA, Bacterial/genetics, Bacterial Typing Techniques, Phylogeny, Sequence Analysis, DNA, *Actinomycetales, Fatty Acids/chemistry, Vitamin K 2/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitle
8103Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19461)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19461
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
76880Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID295942.1StrainInfo: A central database for resolving microbial strain identifiers