Strain identifier
BacDive ID: 7431
Type strain:
Species: Microbacterium aoyamense
Strain Designation: KV-492
Strain history: NBRC 101280 <-- S. ?mura KV-492.
NCBI tax ID(s): 344166 (species)
General
@ref: 8103
BacDive-ID: 7431
DSM-Number: 19461
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Microbacterium aoyamense KV-492 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 344166
- Matching level: species
strain history
@ref | history |
---|---|
8103 | <- NRRL <- S. Omura, KV-492 |
67770 | NBRC 101280 <-- S. ?mura KV-492. |
doi: 10.13145/bacdive7431.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Microbacterium
- species: Microbacterium aoyamense
- full scientific name: Microbacterium aoyamense Kageyama et al. 2006
@ref: 8103
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Microbacterium
species: Microbacterium aoyamense
full scientific name: Microbacterium aoyamense Kageyama et al. 2006
strain designation: KV-492
type strain: yes
Culture and growth conditions
culture medium
- @ref: 8103
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8103 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-13, MK-14, MK-12
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
8103 | soil | Aoyamareien, Tokyo | Japan | JPN | Asia |
67770 | Soil form a cemetery in Aoyama | Tokyo | Japan | JPN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 8103
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8103
- description: Microbacterium aoyamense gene for 16S rRNA, partial sequence
- accession: AB234028
- length: 1443
- database: ena
- NCBI tax ID: 344166
Genome sequences
- @ref: 66792
- description: Microbacterium aoyamense DSM 19461
- accession: GCA_023155855
- assembly level: contig
- database: ncbi
- NCBI tax ID: 344166
GC content
@ref | GC-content | method |
---|---|---|
8103 | 69 | |
67770 | 69 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 93.014 | no |
gram-positive | yes | 92.007 | no |
anaerobic | no | 99.535 | no |
aerobic | yes | 95.136 | no |
halophile | no | 92.274 | no |
spore-forming | no | 92.628 | no |
motile | yes | 51.277 | no |
glucose-ferment | no | 90.762 | no |
thermophile | no | 99.246 | no |
glucose-util | yes | 87.158 | no |
External links
@ref: 8103
culture collection no.: DSM 19461, NBRC 101280, NRRL B-24451, JCM 14900, CIP 109366, NCIMB 14561
straininfo link
- @ref: 76880
- straininfo: 295942
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 16957107 | Microbacterium deminutum sp. nov., Microbacterium pumilum sp. nov. and Microbacterium aoyamense sp. nov. | Kageyama A, Takahashi Y, Omura S | Int J Syst Evol Microbiol | 10.1099/ijs.0.64236-0 | 2006 | Actinomycetales/*classification/genetics, Bacterial Typing Techniques, DNA, Bacterial/analysis, Molecular Sequence Data, RNA, Ribosomal, 16S/*analysis/genetics | Genetics |
Phylogeny | 19567581 | Microbacterium invictum sp. nov., isolated from homemade compost. | Vaz-Moreira I, Lopes AR, Faria C, Sproer C, Schumann P, Nunes OC, Manaia CM | Int J Syst Evol Microbiol | 10.1099/ijs.0.005561-0 | 2009 | Actinomycetales/*classification/genetics/*isolation & purification/physiology, Aerobiosis, Base Composition, Catalase/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/metabolism, Peptidoglycan/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Temperature, Vitamin K 2/analysis | Metabolism |
Phylogeny | 36167780 | Microbacterium kunmingensis sp. nov., an attached bacterium of Microcystis aeruginosa. | Xiao Y, Chen M, Chen J, Mao LN, Peng YR, Gui SS, Zhang BH | J Antibiot (Tokyo) | 10.1038/s41429-022-00568-w | 2022 | RNA, Ribosomal, 16S/genetics, *Microcystis, Microbacterium, DNA, Bacterial/genetics, Bacterial Typing Techniques, Phylogeny, Sequence Analysis, DNA, *Actinomycetales, Fatty Acids/chemistry, Vitamin K 2/chemistry | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
8103 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19461) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19461 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
76880 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID295942.1 | StrainInfo: A central database for resolving microbial strain identifiers |