Name: Agrococcus casei R-17892t 2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7256

Type strain:

Species: Agrococcus casei

Strain Designation: R-17892t 2, R-17892t2

Culture col. no.: DSM 18061, CIP 109629, LMG 22410, JCM 14916

Strain history: CIP <- 2007, DSMZ <- M. Vancanneyt, BCCM/LMG, Ghent, Belgium: strain R-17892t2

NCBI tax ID(s): 1255656 (strain), 343512 (species)

SI-ID 93713

LMG 22410, DSM 18061, JCM 14916, CIP 109629

Special Collections

Section

Agrococcus casei R-17892t 2 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from Gubbeen cheese.

Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Agrococcus*
	Species	**Agrococcus casei**
	Full Scientific Name (LPSN)	Agrococcus casei Bora et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31785]	Gram stain	positive
[Ref.: #117196]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %92.594

[Ref.: #31785]	Cell length	0.9 µm

[Ref.: #31785]	Cell width	0.35 µm

[Ref.: #31785]	Cell shape	rod-shaped
[Ref.: #117196]	Cell shape	coccus-shaped

[Ref.: #31785]	Motility	no
[Ref.: #117196]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.5

[Ref.: #18410]	Colony color	Beige (1001)
[Ref.: #18410]	Incubation period	10-14 days
[Ref.: #18410]	Cultivation medium used	ISP 2

[Ref.: #18410]	Colony color	Beige (1001)
[Ref.: #18410]	Incubation period	10-14 days
[Ref.: #18410]	Cultivation medium used	ISP 3

[Ref.: #18410]	Colony color	Beige (1001)
[Ref.: #18410]	Incubation period	10-14 days
[Ref.: #18410]	Cultivation medium used	ISP 4

[Ref.: #18410]	Colony color	Beige (1001)
[Ref.: #18410]	Incubation period	10-14 days
[Ref.: #18410]	Cultivation medium used	ISP 5

[Ref.: #18410]	Colony color	Beige (1001)
[Ref.: #18410]	Incubation period	10-14 days
[Ref.: #18410]	Cultivation medium used	ISP 6

[Ref.: #18410]	Colony color	Beige (1001)
[Ref.: #18410]	Incubation period	10-14 days
[Ref.: #18410]	Cultivation medium used	ISP 7

[Ref.: #18410]	Multicellular complex forming ability	no
[Ref.: #18410]	Medium Name (multicellularity)	ISP 2

[Ref.: #18410]	Multicellular complex forming ability	no
[Ref.: #18410]	Medium Name (multicellularity)	ISP 3

[Ref.: #18410]	Multicellular complex forming ability	no
[Ref.: #18410]	Medium Name (multicellularity)	ISP 4

[Ref.: #18410]	Multicellular complex forming ability	no
[Ref.: #18410]	Medium Name (multicellularity)	ISP 5

[Ref.: #18410]	Multicellular complex forming ability	no
[Ref.: #18410]	Medium Name (multicellularity)	ISP 6

[Ref.: #18410]	Multicellular complex forming ability	no
[Ref.: #18410]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7355]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #7355]

Culture medium growth

[Ref.: #7355]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7355]

Culture medium composition

expand / minimize

[Ref.: #18410]

Culture medium

ISP 2

[Ref.: #18410]

Culture medium growth

[Ref.: #18410]

Culture medium composition

expand / minimize

[Ref.: #18410]

Culture medium

ISP 3

[Ref.: #18410]

Culture medium growth

[Ref.: #18410]

Culture medium composition

expand / minimize

[Ref.: #18410]

Culture medium

ISP 4

[Ref.: #18410]

Culture medium growth

[Ref.: #18410]

Culture medium composition

expand / minimize

[Ref.: #18410]

Culture medium

ISP 5

[Ref.: #18410]

Culture medium growth

[Ref.: #18410]

Culture medium composition

expand / minimize

[Ref.: #18410]

Culture medium

ISP 6

[Ref.: #18410]

Culture medium growth

[Ref.: #18410]

Culture medium composition

expand / minimize

[Ref.: #18410]

Culture medium

ISP 7

[Ref.: #18410]

Culture medium growth

[Ref.: #18410]

Culture medium composition

expand / minimize

[Ref.: #37794]

Culture medium

MEDIUM 338 - for Sanguibacter keddieii

[Ref.: #37794]

Culture medium growth

[Ref.: #37794]

Culture medium composition

expand / minimize

[Ref.: #117196]

Culture medium

CIP Medium 338

[Ref.: #117196]

Culture medium growth

[Ref.: #117196]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7355]	growth	28 °C
[Ref.: #18410]	optimum	28 °C
[Ref.: #31785]	growth	20-30 °C
[Ref.: #31785]	optimum	25 °C
[Ref.: #37794]	growth	30 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #31785]			optimum	8
[Ref.: #31785]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31785]	Oxygen tolerance	aerobe
[Ref.: #117196]	Oxygen tolerance	obligate aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #31785]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: MK-11, MK-12

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #31785]	glucose ChEBI	+	carbon source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #31785]	mannose ChEBI	+	carbon source
[Ref.: #117196]	nitrate ChEBI	-	reduction
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #117196]	nitrite ChEBI	-	reduction
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #31785]	tween 80 ChEBI	+	carbon source
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #117196]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #31785]	catalase	+	1.11.1.6
[Ref.: #117196]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #117196]	oxidase	-
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #117196]	urease	-	3.5.1.5
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18410]	92	-	+/-	+	-	-	-	+	-	-	+	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18410]	120	not determinedn.d.	-	+	+	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-
[Ref.: #117196]	12014	-	-	+	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	pentose phosphate pathway	100	11 of 11
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	ketogluconate metabolism	87.5	7 of 8
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	glutamate and glutamine metabolism	85.71	24 of 28
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	lactate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	NAD metabolism	72.22	13 of 18
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	citric acid cycle	71.43	10 of 14
[Ref.: #66794]	pyrimidine metabolism	71.11	32 of 45
[Ref.: #66794]	tryptophan metabolism	71.05	27 of 38
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	Entner Doudoroff pathway	70	7 of 10
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	purine metabolism	68.09	64 of 94
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	aspartate and asparagine metabolism	66.67	6 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	alanine metabolism	65.52	19 of 29
[Ref.: #66794]	histidine metabolism	65.52	19 of 29
[Ref.: #66794]	phenol degradation	65	13 of 20
[Ref.: #66794]	tetrahydrofolate metabolism	64.29	9 of 14
[Ref.: #66794]	non-pathway related	63.16	24 of 38
[Ref.: #66794]	C4 and CAM-carbon fixation	62.5	5 of 8
[Ref.: #66794]	arginine metabolism	62.5	15 of 24
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	cellulose degradation	60	3 of 5
[Ref.: #66794]	3-chlorocatechol degradation	60	3 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	60	6 of 10
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	oxidative phosphorylation	59.34	54 of 91
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	methionine metabolism	57.69	15 of 26
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	lysine metabolism	54.76	23 of 42
[Ref.: #66794]	vitamin B6 metabolism	54.55	6 of 11
[Ref.: #66794]	lipid metabolism	51.61	16 of 31
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	heme metabolism	50	7 of 14
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	degradation of sugar acids	48	12 of 25
[Ref.: #66794]	ascorbate metabolism	45.45	10 of 22
[Ref.: #66794]	metabolism of disaccharids	45.45	5 of 11
[Ref.: #66794]	daunorubicin biosynthesis	44.44	4 of 9
[Ref.: #66794]	allantoin degradation	44.44	4 of 9
[Ref.: #66794]	reductive acetyl coenzyme A pathway	42.86	3 of 7
[Ref.: #66794]	glutathione metabolism	42.86	6 of 14
[Ref.: #66794]	degradation of pentoses	42.86	12 of 28
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	3-phenylpropionate degradation	40	6 of 15
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	vitamin B1 metabolism	38.46	5 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	arachidonic acid metabolism	33.33	6 of 18
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	androgen and estrogen metabolism	31.25	5 of 16
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	degradation of hexoses	27.78	5 of 18
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	d-xylose degradation	27.27	3 of 11
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	biotin biosynthesis	25	1 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
[Ref.: #66794]	sulfate reduction	23.08	3 of 13
[Ref.: #66794]	carotenoid biosynthesis	22.73	5 of 22
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7355]	Sample type/isolated from	Gubbeen cheese
[Ref.: #7355]	Country	Ireland
[Ref.: #7355]	Country ISO 3 Code	IRL
[Ref.: #7355]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Gubbeen cheese

[Ref.: #117196]	Sample type/isolated from	Food, Sear-ripened cheeses, surfaces
[Ref.: #117196]	Country	United Kingdom
[Ref.: #117196]	Country ISO 3 Code	GBR
[Ref.: #117196]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Dairy product

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ168427 (>99% sequence identity) for Agrococcus casei subclade from Microbeatlas

Aquatic Samples	88
Soil Samples	147
Animal Samples	74
Plant Samples	169
Total Samples	478

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18410]	Biosafety level	1	German classification
[Ref.: #7355]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #117196]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7355]	Agrococcus casei strain LMG 22410 16S ribosomal RNA gene, partial sequence	DQ168427	1466	GenBank ENA	343512 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Agrococcus casei LMG 22410	GCA_900163565	contig	GenBank ENA	1255656 tax ID
[Ref.: #66792]	Agrococcus casei LMG 22410 strain LMG 22410	1255656.3	wgs	PATRIC	1255656 tax ID	*
[Ref.: #66792]	Agrococcus casei LMG 22410	2835022881	draft	JGI IMG/M	1255656 tax ID	*

[Ref.: #31785]	GC-content	65 mol%
[Ref.: #67770]	GC-content	65 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Agrococcus casei LMG 22410 strain LMG 22410 PATRIC: 1255656.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Agrococcus casei LMG 22410 strain LMG 22410 PATRIC: 1255656.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.594	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.071	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	81.613	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	82.19	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93.5	no

Availability in culture collections External links

[Ref.: #7355]

Culture collection no.

DSM 18061, CIP 109629, LMG 22410, JCM 14916

[Ref.: #76708]

SI-ID 93713

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Agrococcus casei sp. nov., isolated from the surfaces of smear-ripened cheeses.	Bora N, Vancanneyt M, Gelsomino R, Swings J, Brennan N, Cogan TM, Larpin S, Desmasures N, Lechner FE, Kroppenstedt RM, Ward AC, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijs.0.64270-0	2007	*
Metabolism	In silico prediction of the enzymes involved in the degradation of the herbicide molinate by Gulosibacter molinativorax ON4^T.	Lopes AR, Bunin E, Viana AT, Froufe H, Munoz-Merida A, Pinho D, Figueiredo J, Barroso C, Vaz-Moreira I, Bellanger X, Egas C, Nunes OC	Sci Rep	10.1038/s41598-022-18732-5	2022	*

References

#7355

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18061

#18410

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31785

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28057 (see below)

#37794 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76708

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID93713.1 )

#117196 Collection of Institut Pasteur ; Curators of the CIP; CIP 109629

#28057

IJSEM 92 2007 ( DOI 10.1099/ijs.0.64270-0 , PubMed 17220448 )

* These data were automatically processed and therefore are not curated

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Search for species Agrococcus casei in external resources:
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Agrococcus casei LMG 22410 strain LMG 22410

Agrococcus casei LMG 22410 strain LMG 22410

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