Name: Methylophilus glucosoxydans B
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7240

Type strain:

Species: Methylophilus glucosoxydans

Strain Designation: B

Variant: Isotype of BacDive ID 131041

Culture col. no.: DSM 5898, CCUG 59685, VKM B-1607

Strain history: <- Acad. L. Kalakouzky and M. Vainstein, IBPhM USSR Acad Sci.

NCBI tax ID(s): 752553 (species)

SI-ID 48023

DSM 5898, VKM B-1607, CCUG 59685

Special Collections

Other strains from Methylophilus glucosoxydans

Section

Methylophilus glucosoxydans B is an aerobe, Gram-negative, motile bacterium that was isolated from rhizosphere of rice .

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Nitrosomonadales*
	Family	*Methylophilaceae*
	Genus	*Methylophilus*
	Species	**Methylophilus glucosoxydans**
	Full Scientific Name (LPSN)	Methylophilus glucosoxydans Doronina et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #29893]	Gram stain	negative

[Ref.: #29893]	Cell length	1.0-2.5 µm

[Ref.: #29893]	Cell width	0.3-0.5 µm

[Ref.: #29893]	Cell shape	rod-shaped

[Ref.: #29893]	Motility	yes

[Ref.: #29893]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2155]

Culture medium

2% MH MEDIUM (DSMZ Medium 620)

[Ref.: #2155]

Culture medium growth

[Ref.: #2155]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2155]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #2155]	growth	28 °C
[Ref.: #29893]	growth	10-34 °C
[Ref.: #29893]	optimum	28-30 °C

	pH	Kind of pH		pH
[Ref.: #29893]			optimum	7.0-7.6
[Ref.: #29893]			growth	6.5-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29893]

Oxygen tolerance

aerobe

[Ref.: #29893]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29893]		NaCl		growth	0.05-0.5	%
[Ref.: #29893]		NaCl		optimum	0.05	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29893]		glucose ChEBI	+	carbon source
[Ref.: #29893]		nitrate ChEBI	+	reduction

	Metabolite production	Metabolite	Production
[Ref.: #29893]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #29893]		indole ChEBI	+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29893]		cytochrome oxidase	+	1.9.3.1
[Ref.: #29893]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2155]	Sample type/isolated from	rhizosphere of rice (Oryza sativa L.)
[Ref.: #2155]	Host species	Oryza sativa
[Ref.: #2155]	Country	Vietnam
[Ref.: #2155]	Country ISO 3 Code	VNM
[Ref.: #2155]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2155]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2155]	Methylophilus glucosoxydans strain B 16S ribosomal RNA gene, partial sequence	HM001269	1387	GenBank ENA	752553 tax ID

[Ref.: #2155]	GC-content	52.5 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #29893]	GC-content	52.5 mol%

Availability in culture collections External links

[Ref.: #2155]

Culture collection no.

DSM 5898, CCUG 59685, VKM B-1607

[Ref.: #76692]

SI-ID 48023

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methylophilus glucosoxydans sp. nov., a restricted facultative methylotroph from rice rhizosphere.	Doronina NV, Gogleva AA, Trotsenko YA	Int J Syst Evol Microbiol	10.1099/ijs.0.024620-0	2011	*

References

#2155

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5898

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29893

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26266 (see below)

#76692

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48023.1 )

#26266

IJSEM 196 2012 ( DOI 10.1099/ijs.0.024620-0 , PubMed 21378135 )

* These data were automatically processed and therefore are not curated

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