Methylorubrum suomiense (DSM 14458, NCIMB 13778, VKM B-2238)

Name: Methylorubrum suomiense (DSM 14458, NCIMB 13778, VKM B-2238)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7173

Type strain

Strain Designation F20

Culture col. no. DSM 14458 NCIMB 13778 VKM B-2238 CCUG 55907 F20

NCBI tax ID(s) 144191

Special Collections DSMZ CCUG

History DSMZ <- Y. A. Trotsenko; F20 <- N. V. Doronina

Links

Methylorubrum suomiense F20 is an aerobe bacterium that was isolated from forest soil near Lammi biological station.

aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 100758

NCIMB 13778,VKM B-2238,DSM 14458,KCTC 12963,ATCC BAA-713,CCUG 55907

@ref 20215

Last LPSN update 2026-05-29 08:26:35

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Methylobacteriaceae

Genus Methylorubrum

Species Methylorubrum suomiense

Full scientific name Methylorubrum suomiense (Doronina et al. 2002) Green and Ardley 2018

Synonyms (1)

Methylobacterium suomiense

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98.315

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5363	MEDIUM FOR DSM 14457 AND 14458 (DSMZ Medium 956)		Medium recipe at MediaDive	Name: MEDIUM FOR DSM 14457 AND 14458 (DSMZ Medium 956) Composition: Methanol 5.0 g/l Methylamine 3.0 g/l (NH4)2SO4 2.0 g/l KH2PO4 2.0 g/l NaCl 0.5 g/l MgSO4 x 7 H2O 0.125 g/l FeSO4 x 7 H2O 0.002 g/l Distilled water
5363	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
5363	positive	growth	28
60786	positive	growth	30

Physiology and metabolism

Oxygen tolerance

60786

Oxygen toleranceaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
5363	forest soil near Lammi biological station	Finland	FIN	Europe
60786	Soil

Taxonmaps

69479

Global distribution of 16S sequence AB175645 (>99% sequence identity) for Methylorubrum from Microbeatlas

Aquatic Samples	23711
Soil Samples	23280
Animal Samples	47578
Plant Samples	16159
Total Samples	110728

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5363	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2217976v1 assembly for Methylorubrum suomiense DSM 14458	contig	GCA_022179765	144191.3	8069138414	144191	64.11
124043	ASM4267984v1 assembly for Methylorubrum suomiense CCUG 55907	scaffold	GCA_042679845			144191	17.11
124043	ASM4266603v1 assembly for Methylorubrum suomiense CCUG 55907	contig	GCA_042666035			144191	8.66

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Methylobacterium suomicum 16S ribosomal RNA gene, partial sequence	AY009404	1413		144191
20218	Methylobacterium suomiense gene for 16S ribosomal RNA, partial sequence, strain:NCIMB 13778	AB175645	1433		144191

GC content

@ref	GC-content (mol%)	Method
5363	65.8	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Methylorubrum suomiense DSM 14458
NCBI: GCA_022179765.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.32	no
125438	anaerobic	anaerobicⓘ	no	94.45	yes
125438	aerobic	aerobicⓘ	yes	83.64	yes
125438	spore-forming	spore-formingⓘ	no	87.03	no
125438	thermophilic	thermophileⓘ	no	96.50	yes
125438	flagellated	motile2+ⓘ	yes	74.85	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Review of the genus Methylobacterium and closely related organisms: a proposal that some Methylobacterium species be reclassified into a new genus, Methylorubrum gen. nov.	Green PN, Ardley JK	Int J Syst Evol Microbiol	10.1099/ijsem.0.002856	2018
Phylogeny	Methylobacterium suomiense sp. nov. and Methylobacterium lusitanum sp. nov., aerobic, pink-pigmented, facultatively methylotrophic bacteria.	Doronina NV, Trotsenko YA, Kuznetsov BB, Tourova TP, Salkinoja-Salonen MS	Int J Syst Evol Microbiol	10.1099/00207713-52-3-773	2002

References

#5363	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14458
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#60786	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55907
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Methylorubrum suomiense (DSM 14458, NCIMB 13778, VKM B-2238)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_022179765

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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