Name: Methylorubrum suomiense F20
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7173

Type strain:

Species: Methylorubrum suomiense

Strain Designation: F20

Culture col. no.: DSM 14458, NCIMB 13778, VKM B-2238, CCUG 55907

Strain history: <- Y. A. Trotsenko; F20 <- N. V. Doronina

NCBI tax ID(s): 144191 (species)

SI-ID 100758

NCIMB 13778, VKM B-2238, DSM 14458, KCTC 12963, ATCC BAA-713, CCUG 55907

Section

Methylorubrum suomiense F20 is an aerobe, mesophilic bacterium that was isolated from forest soil near Lammi biological station.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Methylobacteriaceae*
	Genus	*Methylorubrum*
	Species	**Methylorubrum suomiense**
	Full Scientific Name (LPSN)	Methylorubrum suomiense (Doronina et al. 2002) Green and Ardley 2018

Synonym

Methylobacterium suomiense

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5363]

Culture medium

MEDIUM FOR DSM 14457 AND 14458 (DSMZ Medium 956)

[Ref.: #5363]

Culture medium growth

[Ref.: #5363]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5363]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5363]			growth	28 °C
[Ref.: #60786]			growth	30 °C

[Ref.: #5363]	Temperature range	mesophilic
[Ref.: #60786]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #60786]

Oxygen tolerance

aerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5363]	Sample type/isolated from	forest soil near Lammi biological station
[Ref.: #5363]	Country	Finland
[Ref.: #5363]	Country ISO 3 Code	FIN
[Ref.: #5363]	Continent	Europe

[Ref.: #60786]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB175645 (>99% sequence identity) for Methylorubrum from Microbeatlas

Aquatic Samples	23711
Soil Samples	23280
Animal Samples	47578
Plant Samples	16159
Total Samples	110728

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5363]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Methylobacterium suomicum 16S ribosomal RNA gene, partial sequence	AY009404	1413	ENA	144191 tax ID	*
[Ref.: #20218]	Methylobacterium suomiense gene for 16S ribosomal RNA, partial sequence, strain:NCIMB 13778	AB175645	1433	ENA	144191 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methylorubrum suomiense DSM 14458	GCA_022179765	contig	GenBank	144191 tax ID	*

[Ref.: #5363]

GC-content

65.8 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methylorubrum suomiense DSM 14458 NCBI: GCA_022179765.1
[Ref.: #69480]	flagellated	no	71.611	no
[Ref.: #69480]	gram-positive	no	98.137	no
[Ref.: #69480]	anaerobic	no	97.657	yes
[Ref.: #69480]	aerobic	yes	89.919	yes
[Ref.: #69480]	halophile	no	88.706	no
[Ref.: #69480]	spore-forming	no	94.175	no
[Ref.: #69480]	motile	yes	89.562	no
[Ref.: #69480]	glucose-ferment	no	89.767	no
[Ref.: #69480]	thermophile	no	98.981	yes
[Ref.: #69480]	glucose-util	yes	87.675	no

Availability in culture collections External links

[Ref.: #5363]

Culture collection no.

DSM 14458, NCIMB 13778, VKM B-2238, CCUG 55907

[Ref.: #76626]

SI-ID 100758

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Review of the genus Methylobacterium and closely related organisms: a proposal that some Methylobacterium species be reclassified into a new genus, Methylorubrum gen. nov.	Green PN, Ardley JK	Int J Syst Evol Microbiol	10.1099/ijsem.0.002856	2018	*
Phylogeny	Methylobacterium suomiense sp. nov. and Methylobacterium lusitanum sp. nov., aerobic, pink-pigmented, facultatively methylotrophic bacteria.	Doronina NV, Trotsenko YA, Kuznetsov BB, Tourova TP, Salkinoja-Salonen MS	Int J Syst Evol Microbiol	10.1099/00207713-52-3-773	2002	*

References

#5363

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14458

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#60786 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55907

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76626

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100758.1 )

* These data were automatically processed and therefore are not curated

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Methylorubrum suomiense DSM 14458

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