Name: Methylorubrum podarium FM4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7174

Type strain:

Species: Methylorubrum podarium

Strain Designation: FM4

Culture col. no.: DSM 15083, ATCC BAA-547

Strain history: <- A. P. Wood; FM4

NCBI tax ID(s): 200476 (species)

SI-ID 297262

ATCC BAA-547, DSM 15083

Section

Methylorubrum podarium FM4 is an aerobe, mesophilic bacterium that was isolated from human foot.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Methylobacteriaceae*
	Genus	*Methylorubrum*
	Species	**Methylorubrum podarium**
	Full Scientific Name (LPSN)	Methylorubrum podarium (Anesti et al. 2006) Green and Ardley 2018

Synonym

Methylobacterium podarium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5700]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #5700]

Culture medium growth

[Ref.: #5700]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5700]

Culture medium composition

expand / minimize

[Ref.: #5700]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #5700]

Culture medium growth

[Ref.: #5700]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5700]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5700]			growth	37 °C

[Ref.: #5700]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5700]

Oxygen tolerance

aerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5700]	Sample type/isolated from	human foot
[Ref.: #5700]	Geographic location (country and/or sea, region)	London
[Ref.: #5700]	Country	United Kingdom
[Ref.: #5700]	Country ISO 3 Code	GBR
[Ref.: #5700]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Limb	#Foot

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Methylobacterium podarium gene for 16S rRNA, partial sequence, strain: DSM 15083	AB302930	1435	ENA	200476 tax ID	*
[Ref.: #20218]	Methylobacterium podarium 16S ribosomal RNA gene, partial sequence	AF514774	1367	ENA	200476 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methylorubrum podarium DSM 15083	GCA_022179745	contig	GenBank	200476 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methylorubrum podarium DSM 15083 NCBI: GCA_022179745.1
[Ref.: #69480]	flagellated	no	78.047	no
[Ref.: #69480]	gram-positive	no	97.446	no
[Ref.: #69480]	anaerobic	no	97.879	no
[Ref.: #69480]	aerobic	yes	90.597	no
[Ref.: #69480]	halophile	no	93.967	no
[Ref.: #69480]	spore-forming	no	91.001	no
[Ref.: #69480]	motile	yes	82.677	no
[Ref.: #69480]	glucose-ferment	no	89.724	no
[Ref.: #69480]	thermophile	no	99.105	no
[Ref.: #69480]	glucose-util	yes	89.1	no

Availability in culture collections External links

[Ref.: #5700]

Culture collection no.

DSM 15083, ATCC BAA-547

[Ref.: #76627]

SI-ID 297262

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Review of the genus Methylobacterium and closely related organisms: a proposal that some Methylobacterium species be reclassified into a new genus, Methylorubrum gen. nov.	Green PN, Ardley JK	Int J Syst Evol Microbiol	10.1099/ijsem.0.002856	2018	*

References

#5700

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15083

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76627

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297262.1 )

* These data were automatically processed and therefore are not curated

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Methylorubrum podarium DSM 15083

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