Name: Methanogenium marinum AK-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7036

Type strain:

Species: Methanogenium marinum

Strain Designation: AK-1

Culture col. no.: DSM 15558, OCM 752

Strain history: <- D. R. Boone, Portland State Univ., USA; AK-1 <- Y. Liu {1998}

NCBI tax ID(s): 348610 (species)

SI-ID 113600

DSM 15558

Section

Methanogenium marinum AK-1 is an anaerobe, psychrophilic archaeon that was isolated from marine sediments, 38-45 m below the surface.

anaerobe
psychrophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	"Methanomicrobia"
	Order	*Methanomicrobiales*
	Family	*Methanomicrobiaceae*
	Genus	*Methanogenium*
	Species	**Methanogenium marinum**
	Full Scientific Name (LPSN)	Methanogenium marinum Chong et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #6001]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6001]

Culture medium

METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141)

[Ref.: #6001]

Culture medium growth

[Ref.: #6001]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6001]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6001]			growth	22 °C

[Ref.: #6001]

Temperature range

psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6001]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6001]	Sample type/isolated from	marine sediments, 38-45 m below the surface
[Ref.: #6001]	Geographic location (country and/or sea, region)	Alaska, Aleuten Islands, Unalaska Island, Skan Bay
[Ref.: #6001]	Country	USA
[Ref.: #6001]	Country ISO 3 Code	USA
[Ref.: #6001]	Continent	North America
[Ref.: #6001]	Geographic location	53.6167°/-167.0500°
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6001]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6001]	Methanogenium marinum strain AK-1 16S ribosomal RNA gene, partial sequence	DQ177344	1436	ENA	348610 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methanogenium marinum DSM 15558	GCA_028912405	contig	GenBank	348610 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methanogenium marinum DSM 15558 NCBI: GCA_028912405.1
[Ref.: #69480]	motile	no	89.264	no
[Ref.: #69480]	flagellated	no	91.399	no
[Ref.: #69480]	gram-positive	no	95.324	no
[Ref.: #69480]	anaerobic	yes	62.022	yes
[Ref.: #69480]	aerobic	no	92.92	yes
[Ref.: #69480]	halophile	no	77.347	no
[Ref.: #69480]	spore-forming	no	97.251	no
[Ref.: #69480]	glucose-ferment	yes	70.692	no
[Ref.: #69480]	thermophile	no	93.601	no
[Ref.: #69480]	glucose-util	yes	83.944	no

Availability in culture collections External links

[Ref.: #6001]

Culture collection no.

DSM 15558, OCM 752

[Ref.: #76496]

SI-ID 113600

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methanogenium marinum sp. nov., a H2-using methanogen from Skan Bay, Alaska, and kinetics of H2 utilization.	Chong SC, Liu Y, Cummins M, Valentine DL, Boone DR	Antonie Van Leeuwenhoek	10.1023/a:1020535222281	2002	*

References

#6001

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15558

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76496

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID113600.1 )

* These data were automatically processed and therefore are not curated

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Methanogenium marinum DSM 15558

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