Name: Methanogenium marinum AK-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7036

Type strain:

Species: Methanogenium marinum

Strain Designation: AK-1

Culture col. no.: DSM 15558, OCM 752

Strain history: <- D. R. Boone, Portland State Univ., USA; AK-1 <- Y. Liu {1998}

NCBI tax ID(s): 348610 (species)

SI-ID 113600

DSM 15558

Special Collections

DSMZ

Section

Methanogenium marinum AK-1 is an anaerobe, Gram-negative archaeon that was isolated from marine sediments, 38-45 m below the surface.

Gram-negative
anaerobe
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	"Methanomicrobia"
	Order	*Methanomicrobiales*
	Family	*Methanomicrobiaceae*
	Genus	*Methanogenium*
	Species	**Methanogenium marinum**
	Full Scientific Name (LPSN)	Methanogenium marinum Chong et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #6001]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6001]

Culture medium

METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141)

[Ref.: #6001]

Culture medium growth

[Ref.: #6001]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6001]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6001]			growth	22 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6001]

Oxygen tolerance

anaerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %98.62

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6001]	Sample type/isolated from	marine sediments, 38-45 m below the surface
[Ref.: #6001]	Geographic location (country and/or sea, region)	Alaska, Aleuten Islands, Unalaska Island, Skan Bay
[Ref.: #6001]	Country	USA
[Ref.: #6001]	Country ISO 3 Code	USA
[Ref.: #6001]	Continent	North America
[Ref.: #6001]	Geographic location	53.6167°/-167.0500°
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6001]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6001]	Methanogenium marinum strain AK-1 16S ribosomal RNA gene, partial sequence	DQ177344	1436	GenBank ENA	348610 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methanogenium marinum DSM 15558	GCA_028912405	contig	GenBank ENA	348610 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methanogenium marinum DSM 15558 NCBI: GCA_028912405.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	68.699	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	66.38	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	85.3	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	98.62	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	84.63	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	78.346	no

Availability in culture collections External links

[Ref.: #6001]

Culture collection no.

DSM 15558, OCM 752

[Ref.: #76496]

SI-ID 113600

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methanogenium marinum sp. nov., a H2-using methanogen from Skan Bay, Alaska, and kinetics of H2 utilization.	Chong SC, Liu Y, Cummins M, Valentine DL, Boone DR	Antonie Van Leeuwenhoek	10.1023/a:1020535222281	2002	*

References

#6001

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15558

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76496

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID113600.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Methanogenium marinum in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Methanogenium marinum DSM 15558

Change proposal

Change proposal