Name: Methanobrevibacter oralis Milano
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6969

Type strain:

Species: Methanobrevibacter oralis

Strain Designation: Milano

Culture col. no.: DSM 7256, JCM 30027

Strain history: DSM 7256 <-- T. Brusa strain ZR.

NCBI tax ID(s): 66851 (species)

SI-ID 48390

DSM 7256

Special Collections

DSMZ
JCM

Section

Methanobrevibacter oralis Milano is an anaerobe archaeon that was isolated from human oral cavity.

anaerobe
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Methanobacteria*
	Order	*Methanobacteriales*
	Family	*Methanobacteriaceae*
	Genus	*Methanobrevibacter*
	Species	**Methanobrevibacter oralis**
	Full Scientific Name (LPSN)	Methanobrevibacter oralis Ferrari et al. 1995

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3075]

Culture medium

METHANOBREVIBACTER MEDIUM (DSMZ Medium 119a)

[Ref.: #3075]

Culture medium growth

[Ref.: #3075]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3075]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3075]			growth	35 °C
[Ref.: #67770]			growth	35 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3075]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3075]	Sample type/isolated from	human oral cavity
[Ref.: #3075]	Geographic location (country and/or sea, region)	Milan
[Ref.: #3075]	Country	Italy
[Ref.: #3075]	Country ISO 3 Code	ITA
[Ref.: #3075]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Human subgingival plaque
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	-
#Host Body-Site	#Oral cavity and airways	#Mouth

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HE654003 (>99% sequence identity) for Methanobrevibacter oralis from Microbeatlas

Aquatic Samples	215
Soil Samples	175
Animal Samples	10434
Plant Samples	155
Total Samples	10979

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3075]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3075]	Methanobrevibacter oralis partial 16S rRNA gene, type strain DSM 7256T	HE654003	1475	GenBank ENA	66851 tax ID
[Ref.: #20218]	Methanobrevibacter oralis partial SSU rRNA, phylotype 1	AJ001709	599	GenBank ENA	66851 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Methanobrevibacter oralis DSM 7256	GCA_001639275	contig	GenBank ENA	66851 tax ID
[Ref.: #66792]	Methanobrevibacter oralis DSM7256	2684622741	draft	JGI IMG/M	66851 tax ID	*
[Ref.: #66792]	Methanobrevibacter oralis strain DSM 7256	66851.6	wgs	PATRIC	66851 tax ID	*

[Ref.: #3075]	GC-content	27.7 mol%	sequence analysis
[Ref.: #67770]	GC-content	28 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #3075]

Culture collection no.

DSM 7256, JCM 30027

[Ref.: #76431]

SI-ID 48390

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequences of Methanobrevibacter curvatus DSM11111, Methanobrevibacter cuticularis DSM11139, Methanobrevibacter filiformis DSM11501, and Methanobrevibacter oralis DSM7256.	Poehlein A, Seedorf H	Genome Announc	10.1128/genomeA.00617-16	2016	*

References

#3075

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7256

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#76431

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48390.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Methanobrevibacter oralis in external resources:
SILVA
BRENDA
PANGAEA
GBIF