Companilactobacillus nantensis (DSM 16982, CIP 108546, TMW 1.1265)

Name: Companilactobacillus nantensis (DSM 16982, CIP 108546, TMW 1.1265)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6628

Type strain

Strain Designation LP33

Culture col. no. DSM 16982 CIP 108546 TMW 1.1265 LP33 NCIMB 14360 3 more

NCBI tax ID(s) 1423774 305793

Special Collections DSMZ JCM CIP Literature strains

History <- M. Korakli <- Lab. de Microbiologie Alimentaire et Industrielle; LP33 2004, B. Onno, INITIAA, Nantes, France: strain LP33 CIP 108546 <-- B. Onno LP33. CIP <- 2004, B. Onno, ENITIAA, Nantes, France: strain LP33

Links

Companilactobacillus nantensis LP33 is an anaerobe, Gram-positive, rod-shaped bacterium that was isolated from wheat sourdough.

Gram-positive rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 289491

NBRC-107153,LMG 23510,CIP 108546,DSM 16982,JCM 16171

@ref 20215

Last LPSN update 2026-02-09 11:19:16

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Companilactobacillus

Species Companilactobacillus nantensis

Full scientific name Companilactobacillus nantensis (Valcheva et al. 2006) Zheng et al. 2020

Synonyms (1)

Lactobacillus nantensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31462	positive	02-05 µm	1 µm	rod-shaped
121233	positive			rod-shaped
125438					92.5
125438	positive				91.486

Pigmentation

31462

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6601	MRS MEDIUM WITH CYSTEINE (DSMZ Medium 232)	Medium recipe at MediaDive	Name: MRS MEDIUM WITH CYSTEINE (DSMZ Medium 232; with strain-specific modifications) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Maltose 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l K2HPO4 2.0 g/l (NH4)2 citrate 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
36747	MEDIUM 40- for Lactobacillus and Leuconostoc		Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
121233	CIP Medium 40	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
6601	positive	growth	30
31462	positive	growth	30-35
31462	positive	optimum	30
36747	positive	growth	30
67770	positive	growth	30
121233	positive	growth	10-37
121233	negative	growth	45

Culture pH

@ref	Ability	Type	PH
31462	positive	optimum	4.4-7.7
31462	positive	growth	4.4-7.7

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31462	anaerobe
121233	facultative anaerobe
125439	obligate aerobe	98.1

Spore formation

@ref	Spore formation	Confidence
31462
125439		91.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31462	NaCl	positive	growth	03-05 %
31462	NaCl	positive	optimum	03-05 %

Observation

31462

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31462	17057 ChEBI	cellobiose	+	carbon source
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
31462	16947 ChEBI	citrate	+	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	+	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
31462	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
31462	28260 ChEBI	galactose	+	carbon source
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
31462	17234 ChEBI	glucose	+	carbon source
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
31462	17716 ChEBI	lactose	+	carbon source
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
31462	17306 ChEBI	maltose	+	carbon source
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
31462	29864 ChEBI	mannitol	+	carbon source
31462	37684 ChEBI	mannose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
31462	28053 ChEBI	melibiose	+	carbon source
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
31462	506227 ChEBI	N-acetylglucosamine	+	carbon source
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
121233	17632 ChEBI	nitrate	-	reduction
121233	17632 ChEBI	nitrate	+	respiration
121233	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
31462	16634 ChEBI	raffinose	+	carbon source
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
31462	17814 ChEBI	salicin	+	carbon source
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
31462	17992 ChEBI	sucrose	+	carbon source
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
31462	27082 ChEBI	trehalose	+	carbon source
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
121233	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
121233	15688 ChEBI	acetoin	+

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
121233	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121233	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
121233	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
121233	ornithine decarboxylase	-	4.1.1.17
121233	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121233	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
6601	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	+	+/-	+	+	+	+	+	-	+	+	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-
121233	not determinedn.d.	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	+/-	+	+	+	+	+	+	-	+	+	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Food

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
6601	wheat sourdough	Nantes	France	FRA	Europe
67770	French wheat sourdough
121233	Food, Traditional French wheat sourdough	Nantes	France	FRA	Europe	2003

Taxonmaps

69479

Global distribution of 16S sequence LC258154 (>99% sequence identity) for Companilactobacillus from Microbeatlas

Aquatic Samples	523
Soil Samples	475
Animal Samples	3246
Plant Samples	405
Total Samples	4649

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6601	1	Risk group (German classification) According to TRBA 466
121233	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM143581v1 assembly for Companilactobacillus nantensis DSM 16982	contig	GCA_001435815	1423774.3	2660238488	1423774	59.88
67770	ASM799193v1 assembly for Companilactobacillus nantensis NBRC 107153	contig	GCA_007991935	305793.3	8067798205	305793	47.6

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
6601	Lactobacillus nantensis strain LP33 16S ribosomal RNA gene, complete sequence	AY690834	1561	305793
67770	Lactobacillus nantensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 16171	LC258154	1506	305793
124043	Lactobacillus nantensis gene for 16S rRNA, partial sequence, strain: NBRC 107153.	AB626067	1492	305793

GC content

@ref	GC-content (mol%)	Method
6601	38.6
67770	36.2	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Companilactobacillus nantensis DSM 16982
NCBI: GCA_001435815

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	91.40	no
125439	motility	BacteriaNetⓘ	no	75.00	no
125439	gram_stain	BacteriaNetⓘ	positive	89.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus nantensis DSM 16982
PATRIC: 1423774.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.49	yes
125438	anaerobic	anaerobicⓘ	no	84.32	no
125438	spore-forming	spore-formingⓘ	no	84.88	yes
125438	aerobic	aerobicⓘ	no	95.06	yes
125438	thermophilic	thermophileⓘ	no	95.93	yes
125438	flagellated	motile2+ⓘ	no	92.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Lactic acid bacterial bacteriocins and their bioactive properties against food-associated antibiotic-resistant bacteria	Imade EE, Omonigho SE, Babalola OO, Enagbonma BJ.	Ann Microbiol		2021
Genetics	The production of esters by specific sourdough lactic acid bacteria species is limited by the precursor concentrations.	Pradal I, Weckx S, De Vuyst L.	Appl Environ Microbiol	10.1128/aem.02216-24	2025
	Characterization of microbiota of naturally fermented sauerkraut by high-throughput sequencing.	Zhang S, Zhang Y, Wu L, Zhang L, Wang S.	Food Sci Biotechnol	10.1007/s10068-022-01221-w	2023
Phylogeny	Lacticaseibacillus salsurivasis sp. nov. and Companilactobacillus muriivasis sp. nov., Isolated from Traditional Chinese Pickle.	Zhang HX, Li CY, Gu CT.	Curr Microbiol	10.1007/s00284-024-03738-1	2024
Phylogeny	Lactobacillus zhachilii sp. nov., a lactic acid bacterium isolated from Zha-Chili.	Zhang Z, Hou Q, Wang Y, Li W, Zhao H, Sun Z, Guo Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.003362	2019
Phylogeny	Lactobacillus heilongjiangensis sp. nov., isolated from Chinese pickle.	Gu CT, Li CY, Yang LJ, Huo GC	Int J Syst Evol Microbiol	10.1099/ijs.0.053355-0	2013
Phylogeny	Lactobacillus nantensis sp. nov., isolated from French wheat sourdough.	Valcheva R, Ferchichi MF, Korakli M, Ivanova I, Ganzle MG, Vogel RF, Prevost H, Onno B, Dousset X	Int J Syst Evol Microbiol	10.1099/ijs.0.63619-0	2006

References

#6601	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16982
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27763	IJSEM 587 2006 ( DOI 10.1099/ijs.0.63619-0 , PubMed 16514032 )
#31462	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27763
#36747	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121233	Collection of Institut Pasteur ; Curators of the CIP; CIP 108546
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Companilactobacillus nantensis (DSM 16982, CIP 108546, TMW 1.1265)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite tests

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001435815

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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