Name: Lactobacillus kitasatonis Ch-J-2-11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6627

Type strain:

Species: Lactobacillus kitasatonis

Strain Designation: Ch-J-2-11, S1-99

Culture col. no.: CCUG 53874, CIP 108218, DSM 16761, JCM 1039, KCTC 3155, BCRC 17387, LMG 23133

Strain history: CIP <- 2003, JCM <- T. Mitsuoka: strain Ch-J-2-11

NCBI tax ID(s): 1423767 (strain), 237446 (species)

SI-ID 63137

JCM 1039, KCTC 3155, LMG 22685, CIP 108218, LMG 23133, DSM 16761, CCUG 53874, BCRC 17387, CCRC 17387, KCTC 315, BCRC 17512, CCRC 17512

Other strains from Lactobacillus kitasatonis

L. kitasatonis Cla-CZ-130, DSM 109052
L. kitasatonis JCM 1038, KCTC 3154, LMG 23132

Section

Lactobacillus kitasatonis Ch-J-2-11 is a microaerophile, mesophilic, rod-shaped bacterium that was isolated from chicken, intestine.

rod-shaped
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lactobacillus*
	Species	**Lactobacillus kitasatonis**
	Full Scientific Name (LPSN)	Lactobacillus kitasatonis Mukai et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #120450]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #120450]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #120450]	Motility	no
[Ref.: #67771]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.956

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6496]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #6496]

Culture medium growth

[Ref.: #6496]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6496]

Culture medium composition

expand / minimize

[Ref.: #38264]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #38264]

Culture medium growth

[Ref.: #38264]

Culture medium composition

expand / minimize

[Ref.: #120450]

Culture medium

CIP Medium 40

[Ref.: #120450]

Culture medium growth

[Ref.: #120450]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6496]		growth	37 °C
[Ref.: #38264]		growth	37 °C
[Ref.: #60044]		growth	37 °C
[Ref.: #67770]		growth	37 °C
[Ref.: #67771]		growth	37 °C
[Ref.: #120450]		growth	30-45 °C
[Ref.: #120450]	no	growth	10 °C
[Ref.: #120450]	no	growth	15 °C
[Ref.: #120450]	no	growth	22 °C

[Ref.: #6496]	Temperature range	mesophilic
[Ref.: #38264]	Temperature range	mesophilic
[Ref.: #60044]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic
[Ref.: #120450]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6496]	Oxygen tolerance	microaerophile
[Ref.: #60044]	Oxygen tolerance	microaerophile
[Ref.: #67771]	Oxygen tolerance	microaerophile

[Ref.: #67771]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #120450]	D-fructose ChEBI	-	degradation
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #120450]	D-glucose ChEBI	-	degradation
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #120450]	D-mannose ChEBI	-	degradation
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #120450]	lactose ChEBI	-	degradation
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #120450]	maltose ChEBI	-	degradation
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #120450]	nitrate ChEBI	-	reduction
[Ref.: #120450]	nitrate ChEBI	+	respiration
[Ref.: #120450]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #120450]	sucrose ChEBI	-	degradation
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #120450]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #120450]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120450]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120450]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120450]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120450]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120450]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #6496]	14349	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	+	-	+/-	+	-	-	+	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #6496]	14348	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	+	-	+	+	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-
[Ref.: #120450]	11223	not determinedn.d.	-	-	-	-	-	-	-	-	-	+	+	+	+/-	-	-	-	-	-	-	-	-	+	+/-	+/-	+/-	+/-	+	+	-	-	+	-	-	-	-	+/-	-	-	+	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120450]	10994	-	-	+	-	-	+	-	+	-	-	+	+	+	-	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6496]	Sample type/isolated from	chicken, intestine
[Ref.: #6496]	Country	Japan
[Ref.: #6496]	Country ISO 3 Code	JPN
[Ref.: #6496]	Continent	Asia

[Ref.: #60044]	Sample type/isolated from	Chicken intestine
[Ref.: #60044]	Country	Japan
[Ref.: #60044]	Country ISO 3 Code	JPN
[Ref.: #60044]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Chicken intestine

[Ref.: #67771]	Sample type/isolated from	From chicken intestine
[Ref.: #67771]	Country	Japan
[Ref.: #67771]	Country ISO 3 Code	JPN
[Ref.: #67771]	Continent	Asia

[Ref.: #120450]	Sample type/isolated from	Chicken intestine
[Ref.: #120450]	Country	Japan
[Ref.: #120450]	Country ISO 3 Code	JPN
[Ref.: #120450]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Birds	#Chicken
#Host Body-Site	#Gastrointestinal tract	#Stomach

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC064885 (>99% sequence identity) for Lactobacillus from Microbeatlas

Aquatic Samples	67
Soil Samples	44
Animal Samples	5968
Plant Samples	80
Total Samples	6159

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6496]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120450]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus kitasatonis gene for 16S ribosomal RNA, partial sequence, strain: JCM 1039	LC064885	1464	ENA	237446 tax ID
[Ref.: #6496]	Lactobacillus kitasatonis gene for 16S ribosomal RNA, partial sequence	AB107638	1506	ENA	237446 tax ID
[Ref.: #20218]	Lactobacillus kitasatonis gene for 16S rRNA, partial sequence, strain: JCM 1039	AB289190	648	ENA	237446 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus kitasatonis DSM 16761 = JCM 1039	GCA_001434435	scaffold	GenBank	1423767 tax ID
[Ref.: #67771]	Lactobacillus kitasatonis DSM 16761 = JCM 1039	GCA_000615285	contig	GenBank	1423767 tax ID
[Ref.: #66792]	Lactobacillus kitasatonis DSM 16761 = JCM 1039	1423767.3	wgs	PATRIC	1423767 tax ID	*
[Ref.: #66792]	Lactobacillus kitasatonis JCM 1039	1236941.3	wgs	PATRIC	1423767 tax ID	*
[Ref.: #66792]	Lactobacillus kitasatonis DSM 16761	2660238082	draft	JGI IMG/M	1423767 tax ID	*
[Ref.: #66792]	Lactobacillus kitasatonis JCM 1039	2565956592	draft	JGI IMG/M	1423767 tax ID	*

[Ref.: #6496]	GC-content	37 mol%
[Ref.: #67771]	GC-content	37.5 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lactobacillus kitasatonis DSM 16761 = JCM 1039 DSM 16761 NCBI: GCA_001434435.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus kitasatonis DSM 16761 = JCM 1039 PATRIC: 1423767.3
[Ref.: #69480]	motile	no	95.762	no
[Ref.: #69480]	gram-positive	yes	95.927	yes
[Ref.: #69480]	anaerobic	yes	61.637	yes
[Ref.: #69480]	halophile	yes	85.634	no
[Ref.: #69480]	spore-forming	no	97.39	yes
[Ref.: #69480]	thermophile	no	99.538	yes
[Ref.: #69480]	glucose-util	yes	92.323	no
[Ref.: #69480]	aerobic	no	97.937	yes
[Ref.: #69480]	flagellated	no	97.842	yes
[Ref.: #69480]	glucose-ferment	yes	89.888	no

Availability in culture collections External links

[Ref.: #6496]

Culture collection no.

CCUG 53874, CIP 108218, DSM 16761, JCM 1039, KCTC 3155, BCRC 17387, LMG 23133

[Ref.: #76101]

SI-ID 63137

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus kitasatonis sp. nov., from chicken intestine.	Mukai T, Arihara K, Ikeda A, Nomura K, Suzuki F, Ohori H	Int J Syst Evol Microbiol	10.1099/ijs.0.02815-0	2003	*

References

#6496

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16761

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38264 ; Curators of the CIP;
#60044 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53874

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76101

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID63137.1 )

#120450 Collection of Institut Pasteur ; Curators of the CIP; CIP 108218
* These data were automatically processed and therefore are not curated

Change proposal

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Search for species Lactobacillus kitasatonis in external resources:
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Lactobacillus kitasatonis DSM 16761 = JCM 1039 DSM 16761

Lactobacillus kitasatonis DSM 16761 = JCM 1039

Change proposal

Change proposal