Ligilactobacillus acidipiscis (CCUG 46556, CIP 106750, PCU 207)

Name: Ligilactobacillus acidipiscis (CCUG 46556, CIP 106750, PCU 207)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6606

Type strain

Strain Designation FS60-1

Culture col. no. CCUG 46556 CIP 106750 PCU 207 DSM 15836 HSCC 1411 5 more

NCBI tax ID(s) 1423716 89059

Special Collections DSMZ CCUG JCM CIP

History <- JCM <- S. Tanasupawat; FS60-1 S. Tanasupawat FS60-1. CIP <- 2000, S. Tanasupawat, Bangkok, Thailand: strain FS60-1

Links

Ligilactobacillus acidipiscis FS60-1 is a microaerophile, Gram-positive, rod-shaped bacterium that was isolated from fermented fish.

Gram-positive rod-shaped microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 14972

LMG 19820,JCM 10692,TISTR 1386,CIP 106750,CCUG 46556,DSM 15836,NBRC 102163

@ref 20215

Last LPSN update 2026-02-09 11:19:16

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Ligilactobacillus

Species Ligilactobacillus acidipiscis

Full scientific name Ligilactobacillus acidipiscis (Tanasupawat et al. 2000) Zheng et al. 2020

Synonyms (2)

Lactobacillus cypricasei
Lactobacillus acidipiscis

BacDive ID	Other strains from **Ligilactobacillus acidipiscis** (2)	Type strain
6605	L. acidipiscis LMK3, DSM 15353, CCUG 42961, CIP 106393, ...
161021	L. acidipiscis JCM 10693, HSCC 1413, LMG 23135, NRIC 0302, ...

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
116012	positive	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6049	MODIFIED MEDIUM 11 (DSMZ Medium 11a)		Medium recipe at MediaDive	Name: MODIFIED MEDIUM 11 (DSMZ Medium 11a) Composition: Glucose 19.8 g/l Meat extract 9.9 g/l Casein peptone 9.9 g/l Na-acetate 4.95 g/l Yeast extract 4.95 g/l (NH4)3 citrate 1.98 g/l K2HPO4 1.98 g/l Tween 80 0.99 g/l MgSO4 x 7 H2O 0.198 g/l MnSO4 x H2O 0.0495 g/l Pyridoxine hydrochloride 0.0001 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Riboflavin 5e-05 g/l Nicotinic acid 5e-05 g/l Calcium pantothenate 5e-05 g/l Biotin 2e-05 g/l Folic acid 2e-05 g/l p-Aminobenzoic acid 1e-05 g/l Vitamin B12 1e-07 g/l Distilled water
116012	CIP Medium 40		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
6049	positive	growth	30
57262	positive	growth	30
67770	positive	growth	30
116012	positive	growth	22-37
116012	negative	growth	10
116012	negative	growth	15
116012	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
6049	microaerophile
57262	aerobe
116012	facultative anaerobe
125439	microaerophile	95.1

Halophily

@ref	Salt	Growth	Tested relation	Concentration
116012	NaCl	positive	growth	10 %

Murein

@ref	Murein short key	Type
6049	A11.31	A4alpha L-Lys-D-Asp

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
116012	17632 ChEBI	nitrate	-	reduction
116012	17632 ChEBI	nitrate	+	respiration
116012	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
116012	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
116012	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116012	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116012	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
116012	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116012	ornithine decarboxylase	-	4.1.1.17
116012	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
68382	valine arylamidase	+		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	L-lactaldehyde degradation	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	methylglyoxal degradation	100	5 of 5
66794	acetate fermentation	100	4 of 4
66794	aspartate and asparagine metabolism	100	9 of 9
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	teichoic acid biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	acetoin degradation	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	peptidoglycan biosynthesis	80	12 of 15
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	valine metabolism	77.78	7 of 9
66794	pyrimidine metabolism	75.56	34 of 45
66794	pentose phosphate pathway	72.73	8 of 11
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	starch degradation	70	7 of 10
66794	vitamin B1 metabolism	69.23	9 of 13
66794	octane oxidation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	non-pathway related	65.79	25 of 38
66794	photosynthesis	64.29	9 of 14
66794	purine metabolism	62.77	59 of 94
66794	degradation of sugar alcohols	62.5	10 of 16
66794	ketogluconate metabolism	62.5	5 of 8
66794	phenylalanine metabolism	61.54	8 of 13
66794	NAD metabolism	61.11	11 of 18
66794	glycogen metabolism	60	3 of 5
66794	threonine metabolism	60	6 of 10
66794	factor 420 biosynthesis	60	3 of 5
66794	oxidative phosphorylation	59.34	54 of 91
66794	alanine metabolism	58.62	17 of 29
66794	degradation of pentoses	57.14	16 of 28
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	propanol degradation	57.14	4 of 7
66794	serine metabolism	55.56	5 of 9
66794	d-mannose degradation	55.56	5 of 9
66794	urea cycle	53.85	7 of 13
66794	methionine metabolism	53.85	14 of 26
66794	glutamate and glutamine metabolism	53.57	15 of 28
66794	cysteine metabolism	50	9 of 18
66794	cyclohexanol degradation	50	2 of 4
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	ethanol fermentation	50	1 of 2
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
66794	degradation of hexoses	50	9 of 18
66794	isoleucine metabolism	50	4 of 8
66794	sulfopterin metabolism	50	2 of 4
66794	propionate fermentation	50	5 of 10
66794	arginine metabolism	50	12 of 24
66794	butanoate fermentation	50	2 of 4
66794	glycogen biosynthesis	50	2 of 4
66794	proline metabolism	45.45	5 of 11
66794	metabolism of disaccharids	45.45	5 of 11
66794	lysine metabolism	45.24	19 of 42
66794	lipid metabolism	45.16	14 of 31
66794	mevalonate metabolism	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	arachidonate biosynthesis	40	2 of 5
66794	Entner Doudoroff pathway	40	4 of 10
66794	lipoate biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	isoprenoid biosynthesis	38.46	10 of 26
66794	C4 and CAM-carbon fixation	37.5	3 of 8
66794	d-xylose degradation	36.36	4 of 11
66794	tetrahydrofolate metabolism	35.71	5 of 14
66794	tryptophan metabolism	34.21	13 of 38
66794	flavin biosynthesis	33.33	5 of 15
66794	sulfoquinovose degradation	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	sphingosine metabolism	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	histidine metabolism	31.03	9 of 29
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	citric acid cycle	28.57	4 of 14
66794	reductive acetyl coenzyme A pathway	28.57	2 of 7
66794	vitamin B6 metabolism	27.27	3 of 11
66794	ascorbate metabolism	27.27	6 of 22
66794	toluene degradation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	gluconeogenesis	25	2 of 8
66794	lactate fermentation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	androgen and estrogen metabolism	25	4 of 16
66794	sulfate reduction	23.08	3 of 13
66794	leucine metabolism	23.08	3 of 13
66794	nitrate assimilation	22.22	2 of 9
66794	chorismate metabolism	22.22	2 of 9
66794	4-hydroxymandelate degradation	22.22	2 of 9
66794	arachidonic acid metabolism	22.22	4 of 18
66794	tyrosine metabolism	21.43	3 of 14
66794	glutathione metabolism	21.43	3 of 14
66794	vitamin B12 metabolism	20.59	7 of 34

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116012	-	-	+	-	-	+	+	-	-	-	+	+	-	-	-	+	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
6049	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	+	+	+	-	+	-	-	+	-	-	+	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-
116012	not determinedn.d.	-	-	-	-	+/-	-	-	-	-	+/-	+/-	+/-	+/-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	+/-	-	-	+/-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Seafood
#Host	#Fishes	-
#Engineered	#Food production	#Fermented

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Isolation date
6049	fermented fish	Thailand	THA	Asia
67770	Fermented fish (pla-ra)	Thailand	THA	Asia
116012	Fermented fish	Thailand	THA	Asia	1996

Taxonmaps

69479

Global distribution of 16S sequence LC145575 (>99% sequence identity) for Ligilactobacillus from Microbeatlas

Aquatic Samples	706
Soil Samples	1132
Animal Samples	21773
Plant Samples	527
Total Samples	24138

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6049	1	Risk group (German classification) According to TRBA 466
116012	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM4268208v1 assembly for Ligilactobacillus acidipiscis PCU 207	contig	GCA_042682085			89059	76.42
66792	ASM799113v1 assembly for Ligilactobacillus acidipiscis NBRC 102163	contig	GCA_007991135	89059.10		89059
66792	ASM211799v1 assembly for Ligilactobacillus acidipiscis JCM 10692	scaffold	GCA_002117995	89059.4	8117755597	89059
67770	ASM143575v1 assembly for Ligilactobacillus acidipiscis DSM 15836	scaffold	GCA_001435755	1423716.3	2667527822	1423716

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Lactobacillus acidipiscis gene for 16S rRNA, partial sequence, strain: JCM 10692	AB289009	680	89059
6049	Lactobacillus sp. FS60-1 gene for 16S rRNA, partial sequence	AB023836	1406	89059
67770	Lactobacillus acidipiscis gene for 16S ribosomal RNA, partial sequence, strain: JCM 10692	LC145575	1411	89059
124043	Lactobacillus acidipiscis gene for 16S rRNA, partial sequence, strain: NBRC 102163.	AB326356	1490	89059
124043	Lactobacillus acidipiscis strain PCU 207 16S ribosomal RNA gene, partial sequence.	MT760036	1383	89059
124043	Lactobacillus acidipiscis strain PCU 207 16S ribosomal RNA gene, partial sequence.	MT758135	1383	89059

GC content

@ref	GC-content (mol%)	Method
6049	38.7
67770	38.7	high performance liquid chromatography (HPLC)
67770	39.1	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Ligilactobacillus acidipiscis JCM 10692
NCBI: GCA_002117995

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	87.20	no
125439	motility	BacteriaNetⓘ	no	72.80	no
125439	gram_stain	BacteriaNetⓘ	positive	80.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	95.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus acidipiscis DSM 15836
PATRIC: 1423716.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.36	no
125438	anaerobic	anaerobicⓘ	no	84.76	no
125438	spore-forming	spore-formingⓘ	no	77.32	no
125438	aerobic	aerobicⓘ	no	94.22	no
125438	thermophilic	thermophileⓘ	no	94.86	yes
125438	flagellated	motile2+ⓘ	yes	55.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Ligilactobacillus acidipiscis YJ5 modulates the gut microbiota and produces beneficial metabolites to relieve constipation by enhancing the mucosal barrier.	Shen F, Wang Q, Ullah S, Pan Y, Zhao M, Wang J, Chen M, Feng F, Zhong H.	Food Funct	10.1039/d3fo03259k	2024
Genetics	Metagenomic and physicochemical profiling reveal microbial functions in pit mud for Jiang-Nong Jianxiang Baijiu fermentation.	Cao L, Sun H, Xu Z, Xu X, Shi G, Zhang J, Liang C, Li T, Liu C, Wang M, Tian S, Li E.	BMC Microbiol	10.1186/s12866-025-03884-x	2025
	Combined metagenomics and metabolomics to analyse the fermentation process of Taorong-type Baijiu and its response mechanism with amino acids.	Liu Y, Zhang P, Tang Y, Huang R, Han S, Hou J, Pan C.	Food Chem X	10.1016/j.fochx.2025.102987	2025
	Bacterial and yeast microbial diversity of the ripened traditional middle east surk cheese	Esen Y, Cetin B.	Int Dairy J	10.1016/j.idairyj.2021.105004	2021
	Regulatory effects of molasses on microbial community and amino acid profiles during alfalfa high-temperature fermentation.	Liu J, Wang Z, Hao J, Zhao M, Yu J, Jia Y, Ge G.	Food Chem X	10.1016/j.fochx.2025.103269	2025
Genetics	Whole-Genome Sequence Analysis and Subtractive Screening of Lactobacilli in the Searching for New Probiotics to Protect the Mammary Glands.	Bujnakova D, Galambosiova T, Karahutova L.	Int J Mol Sci	10.3390/ijms262110809	2025
	Microbial Communities and Physiochemical Properties of Four Distinctive Traditionally Fermented Vegetables from North China and Their Influence on Quality and Safety.	Liang T, Xie X, Wu L, Li L, Li H, Xi Y, Feng Y, Xue L, Chen M, Chen X, Zhang J, Ding Y, Wu Q.	Foods	10.3390/foods11010021	2021
	Decoding the Gut Microbiota in Multiple Sclerosis Using Nanopore Long-Read Sequencing: Insights into Disease Severity and Subtypes.	Alshinnawy AS, Badiea EA, Swelam MS, Sayed AA, Mohamed MR.	Mol Neurobiol	10.1007/s12035-025-05194-9	2025
Genetics	MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics.	Caffrey EB, Olm MR, Kothe CI, Wastyk HC, Evans JD, Sonnenburg JL.	mSystems	10.1128/msystems.00141-25	2025
Genetics	Chinese soy-based microbiome and associated microbial risks: a metagenomic investigation.	Xiang X, Li Y, Ye J, Li B, He G, Zhu M, Zhang J, Zhang B, Miao M, Yang Y.	NPJ Biofilms Microbiomes	10.1038/s41522-025-00768-w	2025
	Bacterial metagenome profiling of hand-made herby cheese samples utilizing high-throughput sequencing to detect geographical indication and marketing potential.	Rustemoglu M, Erkan ME, Cengiz G, Hajyzadeh M.	Heliyon	10.1016/j.heliyon.2023.e13334	2023
	Fermentation Characteristics, Nutrient Content, and Microbial Population of Silphium perfoliatum L. Silage Produced with Different Lactic Acid Bacteria Additives.	Jin Y, Yuan B, Li F, Du J, Yu M, Tang H, Zhang L, Wang P.	Animals (Basel)	10.3390/ani15131955	2025
	The Impact of Different Inoculation Schemes on the Microbiota, Physicochemical and Sensory Characteristics of Greek Kopanisti Cheese throughout Production and Ripening.	Kazou M, Gavriil A, Kalagkatsi O, Paschos T, Tsakalidou E.	Microorganisms	10.3390/microorganisms11010066	2022
	Lentilactobacillus buchneri domination during the fermentation of Japanese traditional fermented fish (funazushi).	Tanabe K, Monguchi M, Inoue R, Zamami R, Nakanishi R, Manabe A, Oe K, Komatsuzaki N, Shima J.	Food Sci Nutr	10.1002/fsn3.3002	2022
	Characterization and correlation analysis of microbial flora and flavor profile of stinky acid, a Chinese traditional fermented condiment.	Zhang Z, Zhao H, Zhu R, Cheng S, Yu Y, Xiang L, Xiang Z, Guo Z, Wang Y.	Food Chem X	10.1016/j.fochx.2024.101311	2024
	Comparative genomic analysis of Periweissella and the characterization of novel motile species.	Qiao N, Bechtner J, Cnockaert M, Depoorter E, Diaz-Munoz C, Vandamme P, De Vuyst L, Ganzle MG.	Appl Environ Microbiol	10.1128/aem.01034-23	2023
	Metagenomic Study on Chinese Homemade Paocai: The Effects of Raw Materials and Fermentation Periods on the Microbial Ecology and Volatile Components.	Jiang L, Xian S, Liu X, Shen G, Zhang Z, Hou X, Chen A.	Foods	10.3390/foods11010062	2021
	Improvement of Fermentation Quality in the Fermented Total Mixed Ration with Oat Silage.	Yang H, Wang B, Zhang Q, Cheng H, Yu Z.	Microorganisms	10.3390/microorganisms9020420	2021
	High-throughput qPCR and 16S rRNA gene amplicon sequencing as complementary methods for the investigation of the cheese microbiota.	Dreier M, Meola M, Berthoud H, Shani N, Wechsler D, Junier P.	BMC Microbiol	10.1186/s12866-022-02451-y	2022
Genetics	Comparative Genomics of Lactobacillus acidipiscis ACA-DC 1533 Isolated From Traditional Greek Kopanisti Cheese Against Species Within the Lactobacillus salivarius Clade.	Kazou M, Alexandraki V, Blom J, Pot B, Tsakalidou E, Papadimitriou K	Front Microbiol	10.3389/fmicb.2018.01244	2018
	A novel species of lactic acid bacteria, Ligilactobacillus pabuli sp. nov., isolated from alfalfa silage.	Tohno M, Tanizawa Y, Sawada H, Sakamoto M, Ohkuma M, Kobayashi H.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005587	2022
Phylogeny	Lactobacillus salitolerans sp. nov., a novel lactic acid bacterium isolated from spent mushroom substrates.	Tohno M, Tanizawa Y, Kojima Y, Sakamoto M, Nakamura Y, Ohkuma M, Kobayashi H	Int J Syst Evol Microbiol	10.1099/ijsem.0.003224	2019
Phylogeny	Lactobacillus acidipiscis sp. nov. and Weissella thailandensis sp. nov., isolated from fermented fish in Thailand.	Tanasupawat S, Shida O, Okada S, Komagata K	Int J Syst Evol Microbiol	10.1099/00207713-50-4-1479	2000
Phylogeny	Lactobacillus pobuzihii sp. nov., isolated from pobuzihi (fermented cummingcordia).	Chen YS, Miyashita M, Suzuki KI, Sato H, Hsu JS, Yanagida F	Int J Syst Evol Microbiol	10.1099/ijs.0.016873-0	2009

References

#6049	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15836
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#57262	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 46556
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116012	Collection of Institut Pasteur ; Curators of the CIP; CIP 106750
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Ligilactobacillus acidipiscis (CCUG 46556, CIP 106750, PCU 207)

Name and taxonomic classification

Morphology

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Physiology and metabolism

Oxygen tolerance

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API zym

API 50CHac

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Genome browser: GCA_042682085

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