Strain identifier

BacDive ID: 6606

Type strain: Yes

Species: Ligilactobacillus acidipiscis

Strain Designation: FS60-1

Strain history: CIP <- 2000, S. Tanasupawat, Bangkok, Thailand: strain FS60-1

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6049

BacDive-ID: 6606

DSM-Number: 15836

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive

description: Ligilactobacillus acidipiscis FS60-1 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from fermented fish.

NCBI tax id

NCBI tax idMatching level
1423716strain
89059species

strain history

@refhistory
6049<- JCM <- S. Tanasupawat; FS60-1
67770S. Tanasupawat FS60-1.
116012CIP <- 2000, S. Tanasupawat, Bangkok, Thailand: strain FS60-1

doi: 10.13145/bacdive6606.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Ligilactobacillus
  • species: Ligilactobacillus acidipiscis
  • full scientific name: Ligilactobacillus acidipiscis (Tanasupawat et al. 2000) Zheng et al. 2020
  • synonyms

    @refsynonym
    20215Lactobacillus acidipiscis
    20215Lactobacillus cypricasei

@ref: 6049

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Ligilactobacillus

species: Ligilactobacillus acidipiscis

full scientific name: Ligilactobacillus acidipiscis (Tanasupawat et al. 2000) Zheng et al. 2020

strain designation: FS60-1

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480positive100
116012positiverod-shapedno

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6049MODIFIED MEDIUM 11 (DSMZ Medium 11a)yeshttps://mediadive.dsmz.de/medium/11aName: MODIFIED MEDIUM 11 (DSMZ Medium 11a) Composition: Glucose 19.8 g/l Meat extract 9.9 g/l Casein peptone 9.9 g/l Na-acetate 4.95 g/l Yeast extract 4.95 g/l (NH4)3 citrate 1.98 g/l K2HPO4 1.98 g/l Tween 80 0.99 g/l MgSO4 x 7 H2O 0.198 g/l MnSO4 x H2O 0.0495 g/l Pyridoxine hydrochloride 0.0001 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Riboflavin 5e-05 g/l Nicotinic acid 5e-05 g/l Calcium pantothenate 5e-05 g/l Biotin 2e-05 g/l Folic acid 2e-05 g/l p-Aminobenzoic acid 1e-05 g/l Vitamin B12 1e-07 g/l Distilled water
116012CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperaturerange
6049positivegrowth30mesophilic
57262positivegrowth30mesophilic
67770positivegrowth30mesophilic
116012positivegrowth22-37
116012nogrowth10psychrophilic
116012nogrowth15psychrophilic
116012nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
6049microaerophile
57262aerobe
116012facultative anaerobe

spore formation

@refspore formationconfidence
69481no97
69480no99.991

halophily

  • @ref: 116012
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 10 %

murein

  • @ref: 6049
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371arbutin-builds acid from18305
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
116012nitrate-reduction17632
116012nitrite-reduction16301
116012nitrate+respiration17632

antibiotic resistance

  • @ref: 116012
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite tests

  • @ref: 116012
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
116012oxidase-
116012alcohol dehydrogenase-1.1.1.1
116012catalase-1.11.1.6
116012lysine decarboxylase-4.1.1.18
116012ornithine decarboxylase-4.1.1.17

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116012--+--++---++---+----

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
6049----------++++-------+++-+--+--++-------+---------
116012----+/-----+/-+/-+/-+/--------+/-------+/---+/-+/------------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentisolation date
6049fermented fishThailandTHAAsia
67770Fermented fish (pla-ra)ThailandTHAAsia
116012Fermented fishThailandTHAAsia1996

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Seafood
#Host#Fishes
#Engineered#Food production#Fermented

taxonmaps

  • @ref: 69479
  • File name: preview.99_1644.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_937;97_1090;98_1300;99_1644&stattab=map
  • Last taxonomy: Ligilactobacillus
  • 16S sequence: LC145575
  • Sequence Identity:
  • Total samples: 24138
  • soil counts: 1132
  • aquatic counts: 706
  • animal counts: 21773
  • plant counts: 527

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
60491Risk group (German classification)
1160121Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Lactobacillus acidipiscis gene for 16S rRNA, partial sequence, strain: JCM 10692AB289009680ena89059
6049Lactobacillus sp. FS60-1 gene for 16S rRNA, partial sequenceAB0238361406ena89059
67770Lactobacillus acidipiscis gene for 16S ribosomal RNA, partial sequence, strain: JCM 10692LC1455751411ena89059

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Ligilactobacillus acidipiscis NBRC 102163GCA_007991135contigncbi89059
66792Ligilactobacillus acidipiscis JCM 10692GCA_002117995scaffoldncbi89059
66792Lactobacillus acidipiscis DSM 158361423716.3wgspatric1423716
66792Lactobacillus acidipiscis strain JCM 1069289059.4wgspatric89059
66792Lactobacillus acidipiscis strain NBRC 10216389059.10wgspatric89059
66792Ligilactobacillus acidipiscis DSM 158362667527822draftimg1423716
67770Ligilactobacillus acidipiscis DSM 15836GCA_001435755scaffoldncbi1423716

GC content

@refGC-contentmethod
604938.7
6777038.7high performance liquid chromatography (HPLC)
6777039.1genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno97no
motileyes64.079no
gram-positiveyes93.436no
anaerobicno89.194yes
halophileyes88.41no
spore-formingno89.61no
glucose-utilyes91.113no
thermophileno98.019yes
aerobicno95.355no
flagellatedno86.583no
glucose-fermentyes90.691no

External links

@ref: 6049

culture collection no.: CCUG 46556, CIP 106750, PCU 207, DSM 15836, HSCC 1411, JCM 10692, NRIC 0300, TISTR 1386, NBRC 102163, DSM 15353

straininfo link

  • @ref: 76080
  • straininfo: 14972

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny10939653Lactobacillus acidipiscis sp. nov. and Weissella thailandensis sp. nov., isolated from fermented fish in Thailand.Tanasupawat S, Shida O, Okada S, Komagata KInt J Syst Evol Microbiol10.1099/00207713-50-4-14792000Base Composition, Cloning, Molecular, DNA, Bacterial/chemistry/genetics, Fermentation, Fish Products/*microbiology, *Food Microbiology, *Genes, Bacterial, Gram-Positive Cocci/*classification/genetics, Lactobacillus/classification/genetics, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/geneticsEnzymology
Phylogeny19783610Lactobacillus pobuzihii sp. nov., isolated from pobuzihi (fermented cummingcordia).Chen YS, Miyashita M, Suzuki KI, Sato H, Hsu JS, Yanagida FInt J Syst Evol Microbiol10.1099/ijs.0.016873-02009Carbohydrate Metabolism, Cordia/metabolism/*microbiology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fermentation, Lactobacillus/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/geneticsMetabolism
Genetics29942291Comparative Genomics of Lactobacillus acidipiscis ACA-DC 1533 Isolated From Traditional Greek Kopanisti Cheese Against Species Within the Lactobacillus salivarius Clade.Kazou M, Alexandraki V, Blom J, Pot B, Tsakalidou E, Papadimitriou KFront Microbiol10.3389/fmicb.2018.012442018Phylogeny
Phylogeny30628884Lactobacillus salitolerans sp. nov., a novel lactic acid bacterium isolated from spent mushroom substrates.Tohno M, Tanizawa Y, Kojima Y, Sakamoto M, Nakamura Y, Ohkuma M, Kobayashi HInt J Syst Evol Microbiol10.1099/ijsem.0.0032242019*Agaricales, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Japan, Lactobacillus/*classification/isolation & purification, Multilocus Sequence Typing, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6049Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15836)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15836
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
57262Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 46556)https://www.ccug.se/strain?id=46556
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
76080Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID14972.1StrainInfo: A central database for resolving microbial strain identifiers
116012Curators of the CIPCollection of Institut Pasteur (CIP 106750)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106750