Ligilactobacillus acidipiscis (DSM 15353, CCUG 42961, CIP 106393)

Name: Ligilactobacillus acidipiscis (DSM 15353, CCUG 42961, CIP 106393)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6605

Type strain

Strain Designation LMK3

Culture col. no. DSM 15353 CCUG 42961 CIP 106393 ATCC BAA-288 LMK3 3 more

NCBI tax ID(s) 1046599 89059

Special Collections DSMZ CCUG JCM KCTC CIP

History <- CIP <- CCUG <- P.A. Lawson <- P. Papademas and R. Robinson; LMK3 (Lactobacillus halloumi) CIP 106393 <-- CCUG 42961 <-- P. A. Lawson LMK3. CIP <- 2000, CCUG <- P. Lawson, Reading, UK: strain LMK3, "Lactobacillus halloumi"

Links

Ligilactobacillus acidipiscis LMK3 is a facultative anaerobe, mesophilic, Gram-positive prokaryote that was isolated from cheese, Halloumi.

Gram-positive rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 376997

CIP 106393,CCUG 42961,DSM 15353,KCTC 13900,JCM 11551,ATCC BAA-288,LMG 21592,CCM 7008,NCIMB 13913,NBRC 102164

@ref 20215

Last LPSN update 2026-02-09 11:19:16

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Ligilactobacillus

Species Ligilactobacillus acidipiscis

Full scientific name Ligilactobacillus acidipiscis (Tanasupawat et al. 2000) Zheng et al. 2020

Synonyms (2)

Lactobacillus cypricasei
Lactobacillus acidipiscis

BacDive ID	Other strains from **Ligilactobacillus acidipiscis** (2)	Type strain
6606	L. acidipiscis FS60-1, CCUG 46556, CIP 106750, PCU 207, ... (type strain)
161021	L. acidipiscis JCM 10693, HSCC 1413, LMG 23135, NRIC 0302, ...

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
116005	positive	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5868	MRS MEDIUM (DSMZ Medium 11)	Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
38621	MEDIUM 40- for Lactobacillus and Leuconostoc		Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
40592	MEDIUM 40- for Lactobacillus and Leuconostoc		Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
116005	CIP Medium 40	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5868	positive	growth	37	mesophilic
38621	positive	growth	37	mesophilic
40592	positive	growth	30	mesophilic
67770	positive	growth	37	mesophilic
116005	positive	growth	22-37
116005	negative	growth	10
116005	negative	growth	15
116005	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
116005	facultative anaerobe
125439	obligate aerobe	96.9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
116005	17632 ChEBI	nitrate	-	reduction
116005	17632 ChEBI	nitrate	+	respiration
116005	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
116005	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
116005	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116005	catalase	-	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
116005	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116005	ornithine decarboxylase	-	4.1.1.17
116005	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
68382	valine arylamidase	+		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	L-lactaldehyde degradation	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	methylglyoxal degradation	100	5 of 5
66794	acetate fermentation	100	4 of 4
66794	aspartate and asparagine metabolism	100	9 of 9
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	teichoic acid biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	acetoin degradation	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	peptidoglycan biosynthesis	80	12 of 15
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	valine metabolism	77.78	7 of 9
66794	pyrimidine metabolism	75.56	34 of 45
66794	pentose phosphate pathway	72.73	8 of 11
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	starch degradation	70	7 of 10
66794	vitamin B1 metabolism	69.23	9 of 13
66794	octane oxidation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	non-pathway related	65.79	25 of 38
66794	photosynthesis	64.29	9 of 14
66794	purine metabolism	62.77	59 of 94
66794	degradation of sugar alcohols	62.5	10 of 16
66794	ketogluconate metabolism	62.5	5 of 8
66794	phenylalanine metabolism	61.54	8 of 13
66794	NAD metabolism	61.11	11 of 18
66794	glycogen metabolism	60	3 of 5
66794	threonine metabolism	60	6 of 10
66794	factor 420 biosynthesis	60	3 of 5
66794	oxidative phosphorylation	59.34	54 of 91
66794	alanine metabolism	58.62	17 of 29
66794	degradation of pentoses	57.14	16 of 28
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	propanol degradation	57.14	4 of 7
66794	serine metabolism	55.56	5 of 9
66794	d-mannose degradation	55.56	5 of 9
66794	urea cycle	53.85	7 of 13
66794	methionine metabolism	53.85	14 of 26
66794	glutamate and glutamine metabolism	53.57	15 of 28
66794	cysteine metabolism	50	9 of 18
66794	cyclohexanol degradation	50	2 of 4
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	ethanol fermentation	50	1 of 2
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
66794	degradation of hexoses	50	9 of 18
66794	isoleucine metabolism	50	4 of 8
66794	sulfopterin metabolism	50	2 of 4
66794	propionate fermentation	50	5 of 10
66794	arginine metabolism	50	12 of 24
66794	butanoate fermentation	50	2 of 4
66794	glycogen biosynthesis	50	2 of 4
66794	proline metabolism	45.45	5 of 11
66794	metabolism of disaccharids	45.45	5 of 11
66794	lysine metabolism	45.24	19 of 42
66794	lipid metabolism	45.16	14 of 31
66794	mevalonate metabolism	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	arachidonate biosynthesis	40	2 of 5
66794	Entner Doudoroff pathway	40	4 of 10
66794	lipoate biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	isoprenoid biosynthesis	38.46	10 of 26
66794	C4 and CAM-carbon fixation	37.5	3 of 8
66794	d-xylose degradation	36.36	4 of 11
66794	tetrahydrofolate metabolism	35.71	5 of 14
66794	tryptophan metabolism	34.21	13 of 38
66794	flavin biosynthesis	33.33	5 of 15
66794	sulfoquinovose degradation	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	sphingosine metabolism	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	histidine metabolism	31.03	9 of 29
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	citric acid cycle	28.57	4 of 14
66794	reductive acetyl coenzyme A pathway	28.57	2 of 7
66794	vitamin B6 metabolism	27.27	3 of 11
66794	ascorbate metabolism	27.27	6 of 22
66794	toluene degradation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	gluconeogenesis	25	2 of 8
66794	lactate fermentation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	androgen and estrogen metabolism	25	4 of 16
66794	sulfate reduction	23.08	3 of 13
66794	leucine metabolism	23.08	3 of 13
66794	nitrate assimilation	22.22	2 of 9
66794	chorismate metabolism	22.22	2 of 9
66794	4-hydroxymandelate degradation	22.22	2 of 9
66794	arachidonic acid metabolism	22.22	4 of 18
66794	tyrosine metabolism	21.43	3 of 14
66794	glutathione metabolism	21.43	3 of 14
66794	vitamin B12 metabolism	20.59	7 of 34

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116005	-	+	+	-	-	+	+	+	-	-	-	+	-	-	-	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
116005	not determinedn.d.	-	-	-	-	+	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	-	+/-	+	+/-	+	-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Dairy product

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
5868	cheese, Halloumi	Cyprus	CYP	Europe
55623	Cheese,Halloumi
67770	Halloumi cheese
116005	Food, Cheese

Taxonmaps

69479

Global distribution of 16S sequence AJ251560 (>99% sequence identity) for Ligilactobacillus from Microbeatlas

Aquatic Samples	706
Soil Samples	1132
Animal Samples	21773
Plant Samples	527
Total Samples	24138

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5868	1	Risk group (German classification) According to TRBA 466
116005	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM143694v1 assembly for Ligilactobacillus acidipiscis DSM 15353	scaffold	GCA_001436945	89059.3	2663763314	89059	7.91
66792	ASM26063v1 assembly for Ligilactobacillus acidipiscis KCTC 13900	contig	GCA_000260635	1046599.3	2513237304	1046599

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
5868	Lactobacillus sp. LMK3 16S rRNA gene, strain LMK3	AJ251560	1456	89059
124043	Lactobacillus acidipiscis gene for 16S rRNA, partial sequence, strain: JCM 11551.	AB289078	665	89059
124043	Lactobacillus acidipiscis gene for 16S rRNA, partial sequence, strain: NBRC 102164.	AB326357	1490	89059

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Ligilactobacillus acidipiscis DSM 15353
NCBI: GCA_001436945

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.90	no
125439	gram_stain	BacteriaNetⓘ	positive	67.20	no
125439	motility	BacteriaNetⓘ	no	71.30	no
125439	spore_formation	BacteriaNetⓘ	no	83.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus acidipiscis KCTC 13900
PATRIC: 1046599.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.26	no
125438	anaerobic	anaerobicⓘ	no	82.89	no
125438	spore-forming	spore-formingⓘ	no	79.39	no
125438	aerobic	aerobicⓘ	no	92.75	yes
125438	thermophilic	thermophileⓘ	no	94.90	yes
125438	flagellated	motile2+ⓘ	yes	56.99	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Potential Prebiotic Effects of Artemisia capillaris-Derived Transglycosylated Product.	Moon H, Kang K, Kim M.	Foods	10.3390/foods13203267	2024
	Inhibition of Differentiation of 3T3-L1 Cells by Increasing Glioma-Associated Oncogene Expression in Chrysanthemum indicum L. Using Lactococcus lactis KCTC 3115.	Cho YJ, Lee JB, Lee Y, Lee MS, Choi J.	Prev Nutr Food Sci	10.3746/pnf.2024.29.4.533	2024
Pathogenicity	Modulation of the Gut-Lung Axis by Water Kefir and Kefiran and Their Impact on Toll-like Receptor 3-Mediated Respiratory Immunity.	Dentice Maidana S, Arganaraz Aybar JN, Albarracin L, Imamura Y, Arellano-Arriagada L, Namai F, Suda Y, Nishiyama K, Villena J, Kitazawa H.	Biomolecules	10.3390/biom14111457	2024
	Potential of gamma-Aminobutyric Acid-Producing Leuconostoc mesenteroides Strains Isolated from Kimchi as a Starter for High-gamma-Aminobutyric Acid Kimchi Fermentation.	Ahn J, Park JY.	Prev Nutr Food Sci	10.3746/pnf.2023.28.4.492	2023
Metabolism	Activities of amylase, proteinase, and lipase enzymes from Lactococcus chungangensis and its application in dairy products.	Konkit M, Kim W.	J Dairy Sci	10.3168/jds.2016-11002	2016
Genetics	Microbiome therapeutic PMC101 inhibits the translocation of carbapenem-resistant Klebsiella while enhancing eubiosis in antibiotic-induced dysbiosis mice.	Tajdozian H, Seo H, Kim S, Rahim MA, Park HA, Sarafraz F, Yoon Y, Kim H, Barman I, Park CE, Ghorbanian F, Lee S, Jeong HR, Song HY.	Med Microbiol Immunol	10.1007/s00430-025-00858-8	2025
Genetics	Complete genome of Pseudoalteromonas phenolica KCTC 12086(T) (= O-BC30(T)), a marine bacterium producing polybrominated aromatic compounds.	Choe H, Lee SH, Kim SG, Park DS, Nasir A, Kim KM.	J Biotechnol	10.1016/j.jbiotec.2015.11.028	2016
Enzymology	Alcohol dehydrogenase activity in Lactococcus chungangensis: application in cream cheese to moderate alcohol uptake.	Konkit M, Choi WJ, Kim W.	J Dairy Sci	10.3168/jds.2015-9697	2015
Phylogeny	Three Phages from a Boreal Lake during Ice Cover Infecting Xylophilus, Caulobacter, and Polaromonas Species.	Laanto E, Oksanen HM.	Viruses	10.3390/v15020307	2023
	In Silico Comparative Genomic Analysis Revealed a Highly Conserved Proteolytic System in Lactobacillus delbrueckii.	Elean M, Albarracin L, Villena J, Kitazawa H, Saavedra L, Hebert EM.	Int J Mol Sci	10.3390/ijms241411309	2023
	Diversity of a Lactic Acid Bacterial Community during Fermentation of Gajami-Sikhae, a Traditional Korean Fermented Fish, as Determined by Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry.	Kim E, Won JE, Yang SM, Kim HJ, Kim HY.	Foods	10.3390/foods11070909	2022
Pathogenicity	Anti-Inflammation and Anti-Melanogenic Effects of Maca Root Extracts Fermented Using Lactobacillus Strains.	Yang J, Cho H, Gil M, Kim KE.	Antioxidants (Basel)	10.3390/antiox12040798	2023
	Valorizing cabbage (Brassica oleracea L. var. capitata) and capsicum (Capsicum annuum L.) wastes: in vitro health-promoting activities.	Liang JL, Yeow CC, Teo KC, Gnanaraj C, Chang YP.	J Food Sci Technol	10.1007/s13197-019-03912-5	2019
	Fermentation of Cucumber Extract with Hydromagnesite as a Neutralizing Agent to Produce an Ingredient for Dermal Magnesium Products.	Nguyen VK, Tran T, Crimmins T, Luong VT, Kang HY.	Materials (Basel)	10.3390/ma12101701	2019
Metabolism	Production of Selenomethionine-Enriched Bifidobacterium bifidum BGN4 via Sodium Selenite Biocatalysis.	Jin W, Yoon C, Johnston TV, Ku S, Ji GE.	Molecules	10.3390/molecules23112860	2018
	Aglycone Isoflavones and Exopolysaccharides Produced by Lactobacillus acidophilus in Fermented Soybean Paste.	Kim JS, Lee JH, Surh J, Kang SA, Jang KH.	Prev Nutr Food Sci	10.3746/pnf.2016.21.2.117	2016
	Human and environmental impacts of nanoparticles: a scoping review of the current literature.	Kumah EA, Fopa RD, Harati S, Boadu P, Zohoori FV, Pak T.	BMC Public Health	10.1186/s12889-023-15958-4	2023
Pathogenicity	Lactobacillus reuteri AN417 cell-free culture supernatant as a novel antibacterial agent targeting oral pathogenic bacteria.	Yang KM, Kim JS, Kim HS, Kim YY, Oh JK, Jung HW, Park DS, Bae KH.	Sci Rep	10.1038/s41598-020-80921-x	2021
Metabolism	Pathway and molecular mechanisms for malachite green biodegradation in Exiguobacterium sp. MG2.	Wang J, Gao F, Liu Z, Qiao M, Niu X, Zhang KQ, Huang X.	PLoS One	10.1371/journal.pone.0051808	2012
Genetics	Metagenomic analysis of a tropical composting operation at the são paulo zoo park reveals diversity of biomass degradation functions and organisms.	Martins LF, Antunes LP, Pascon RC, de Oliveira JC, Digiampietri LA, Barbosa D, Peixoto BM, Vallim MA, Viana-Niero C, Ostroski EH, Telles GP, Dias Z, da Cruz JB, Juliano L, Verjovski-Almeida S, da Silva AM, Setubal JC.	PLoS One	10.1371/journal.pone.0061928	2013
Metabolism	Development of a high-copy plasmid for enhanced production of recombinant proteins in Leuconostoc citreum.	Son YJ, Ryu AJ, Li L, Han NS, Jeong KJ.	Microb Cell Fact	10.1186/s12934-015-0400-8	2016
Metabolism	Use of a novel Escherichia coli-leuconostoc shuttle vector for metabolic engineering of Leuconostoc citreum to overproduce D-lactate.	Chae HS, Lee SH, Lee JH, Park SJ, Lee PC.	Appl Environ Microbiol	10.1128/aem.03291-12	2013
	The Potential Role of Phytonutrients Flavonoids Influencing Gut Microbiota in the Prophylaxis and Treatment of Inflammatory Bowel Disease.	Wang L, Gao M, Kang G, Huang H.	Front Nutr	10.3389/fnut.2021.798038	2021
	Nucleic acid-based approaches to investigate microbial-related cheese quality defects.	O'Sullivan DJ, Giblin L, McSweeney PL, Sheehan JJ, Cotter PD.	Front Microbiol	10.3389/fmicb.2013.00001	2013
Metabolism	Comparative genome analysis of Lactobacillus rhamnosus clinical isolates from initial stages of dental pulp infection: identification of a new exopolysaccharide cluster.	Nadkarni MA, Chen Z, Wilkins MR, Hunter N.	PLoS One	10.1371/journal.pone.0090643	2014
Genetics	Comparative Genomics of Lactobacillus acidipiscis ACA-DC 1533 Isolated From Traditional Greek Kopanisti Cheese Against Species Within the Lactobacillus salivarius Clade.	Kazou M, Alexandraki V, Blom J, Pot B, Tsakalidou E, Papadimitriou K	Front Microbiol	10.3389/fmicb.2018.01244	2018
Genetics	Detection and genomic characterization of motility in Lactobacillus curvatus: confirmation of motility in a species outside the Lactobacillus salivarius clade.	Cousin FJ, Lynch SM, Harris HM, McCann A, Lynch DB, Neville BA, Irisawa T, Okada S, Endo A, O'Toole PW	Appl Environ Microbiol	10.1128/AEM.03594-14	2015
Genetics	Genome sequence of Lactobacillus cypricasei KCTC 13900.	Kim DS, Choi SH, Kim DW, Kim RN, Nam SH, Kang A, Kim A, Park HS	J Bacteriol	10.1128/JB.05659-11	2011
Phylogeny	Paenibacillus ginsengiterrae sp. nov., a ginsenoside-hydrolyzing bacteria isolated from soil of ginseng field.	Huq MA, Kim YJ, Hoang VA, Siddiqi MZ, Yang DC.	Arch Microbiol	10.1007/s00203-014-1073-0	2015
Phylogeny	Peptoniphilus mikwangii sp. nov., isolated from a clinical specimen of human origin.	Cho E, Park SN, Shin Y, Lim YK, Paek J, Kim HK, Hwang CH, Jo E, Jin D, Chang YH, Kook JK.	Curr Microbiol	10.1007/s00284-014-0712-7	2015
Phylogeny	Lactobacillus pobuzihii sp. nov., isolated from pobuzihi (fermented cummingcordia).	Chen YS, Miyashita M, Suzuki KI, Sato H, Hsu JS, Yanagida F	Int J Syst Evol Microbiol	10.1099/ijs.0.016873-0	2009
Phylogeny	Lactobacillus cypricasei sp. nov., isolated from Halloumi cheese.	Lawson PA, Papademas P, Wacher C, Falsen E, Robinson R, Collins MD	Int J Syst Evol Microbiol	10.1099/00207713-51-1-45	2001

References

#5868	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15353
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#38621	; Curators of the CIP;
#40592	; Curators of the CIP;
#55623	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 42961
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116005	Collection of Institut Pasteur ; Curators of the CIP; CIP 106393
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Ligilactobacillus acidipiscis (DSM 15353, CCUG 42961, CIP 106393)

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