Name: Loigolactobacillus coryniformis 34
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6437

Type strain:

Species: Loigolactobacillus coryniformis

Strain Designation: 34

Culture col. no.: CCUG 30666, DSM 20001, ATCC 25602, NCIB 9711, JCM 1164, BCRC 12935, CECT 982, CIP 103133, KCTC 3167, LMG 9196, NCFB 2741, NCIMB 9711, NRRL B-4391, VTT E-93487, NCDO 2741

Strain history: CIP <- 1988, DSM <- I.G. Abo-Elgana: strain 34

NCBI tax ID(s): 1610 (species)

SI-ID 3271

LMG 9196, ATCC 25602, DSM 20001, JCM 1164, NCFB 2741, NCIMB 9711, NCIB 9711, CCUG 30666, CIP 103133, NCDO 2741, CCRC 12935, CECT 982, KCTC 3167, CCM 4618, VTT E-93487, NRRL B-4391, BCRC 12935, CGMCC 1.1879

Special Collections

Other strains from Loigolactobacillus coryniformis

Section

Loigolactobacillus coryniformis 34 is a facultative anaerobe bacterium that was isolated from silage.

facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Loigolactobacillus*
	Species	**Loigolactobacillus coryniformis**
	Full Scientific Name (LPSN)	Loigolactobacillus coryniformis (Abo-Elnaga and Kandler 1965) Zheng et al. 2020

Synonym

Lactobacillus coryniformis

Information on morphological and physiological properties Morphology

[Ref.: #118760]	Gram stain	positive

[Ref.: #118760]	Cell shape	rod-shaped

[Ref.: #118760]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8417]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #8417]

Culture medium growth

[Ref.: #8417]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8417]

Culture medium composition

expand / minimize

[Ref.: #35495]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #35495]

Culture medium growth

[Ref.: #35495]

Culture medium composition

expand / minimize

[Ref.: #118760]

Culture medium

CIP Medium 41

[Ref.: #118760]

Culture medium growth

[Ref.: #118760]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #118760]

Culture medium

CIP Medium 40

[Ref.: #118760]

Culture medium growth

[Ref.: #118760]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #8417]		growth	30 °C
[Ref.: #35495]		growth	37 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #118760]		growth	25-37 °C
[Ref.: #118760]	no	growth	15 °C
[Ref.: #118760]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #118760]

Oxygen tolerance

facultative anaerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #8417]	Murein short key	A11.31
[Ref.: #8417]	Murein types	A4alpha L-Lys-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #118760]	nitrate ChEBI	-	reduction
[Ref.: #118760]	nitrate ChEBI	+	respiration
[Ref.: #118760]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #118760]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #118760]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #118760]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #118760]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #118760]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #118760]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #118760]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #118760]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #50203]

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	33.2	17.824
C16:0	27.4	16
C16:1 ω7c	8.8	15.819
C18:2 ω6,9c/C18:0 ANTE	7.6	17.724
C19:0 CYCLO ω9c	7.2	18.87
C14:0	4	14
C18:0	3.7	18
C18:1 ω9c	3	17.769
C17:0 CYCLO	2.9	16.888
C15:0	1.3	15
Unidentified	0.8	13.244

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8417]	14908	+/-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	+/-	-	-	+	-	-	-	+	-	-	+	+	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #8417]	14420	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	+	-	-	-	+	-	-	+	+	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #8417]	14419	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	+/-	-	-	+	-	-	-	+	-	-	-	+	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #118760]	9175	not determinedn.d.	-	-	-	-	-	-	-	-	-	+	+	+	+	-	+/-	-	-	+	+	-	-	+	-	+	+/-	+	-	+/-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #118760]	7382	-	-	-	-	-	+	+	-	-	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8417]	Sample type/isolated from	silage

[Ref.: #50203]	Sample type/isolated from	Silage

[Ref.: #67770]	Sample type/isolated from	Silage

[Ref.: #118760]	Sample type/isolated from	Other, Silage
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Animal feed
#Engineered	#Biodegradation	#Composting
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC064900 (>99% sequence identity) for Loigolactobacillus coryniformis from Microbeatlas

Aquatic Samples	2103
Soil Samples	965
Animal Samples	5503
Plant Samples	630
Total Samples	9201

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8417]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118760]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus coryniformis subsp. coryniformis gene for 16S ribosomal RNA, partial sequence, strain: JCM 1164	LC064900	1501	GenBank ENA	913848 tax ID
[Ref.: #20218]	Lactobacillus coryniformis 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA integenic spacer gene, complete sequence; and 23S ribosomal RNA gene, partial sequence	DQ314274	339	GenBank ENA	913848 tax ID	*
[Ref.: #20218]	Lactobacillus coryniformis strain DSM 20001 16S ribosomal RNA gene, partial sequence	M58813	1516	GenBank ENA	1610 tax ID	*
[Ref.: #20218]	Lactobacillus coryniformis subsp. coryniformis gene for 16S rRNA, partial sequence, strain: JCM 1164	AB289063	687	GenBank ENA	913848 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001	GCA_000166795	scaffold	GenBank ENA	913848 tax ID
[Ref.: #67770]	Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001	GCA_001433765	scaffold	GenBank ENA	913848 tax ID
[Ref.: #66792]	Lactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001	913848.7	complete	PATRIC	913848 tax ID	*
[Ref.: #66792]	Lactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001	913848.6	wgs	PATRIC	913848 tax ID	*
[Ref.: #66792]	Loigolactobacillus coryniformis coryniformis DSM 20001	2667528105	draft	JGI IMG/M	913848 tax ID	*
[Ref.: #66792]	Loigolactobacillus coryniformis coryniformis DSM 20001	2814123233	complete	JGI IMG/M	913848 tax ID	*

[Ref.: #8417]	GC-content	46.4 mol%
[Ref.: #67770]	GC-content	42.9 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 DSM 20001 NCBI: GCA_002706425.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 DSM 20001 NCBI: GCA_002706425.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.264	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	85.93	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	92.904	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	76.214	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87.521	no

Availability in culture collections External links

[Ref.: #8417]

Culture collection no.

CCUG 30666, DSM 20001, ATCC 25602, NCIB 9711, JCM 1164, BCRC 12935, CECT 982, CIP 103133, KCTC 3167, LMG 9196, NCFB 2741, NCIMB 9711, NRRL B-4391, VTT E-93487, NCDO 2741

[Ref.: #75911]

SI-ID 3271

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Antimicrobial potential for the combination of bovine lactoferrin or its hydrolysate with lactoferrin-resistant probiotics against foodborne pathogens.	Chen PW, Jheng TT, Shyu CL, Mao FC	J Dairy Sci	10.3168/jds.2012-6112	2013	*
Genetics	Genome sequence of Lactobacillus coryniformis subsp. coryniformis KCTC 3167.	Nam SH, Choi SH, Kang A, Kim DW, Kim DS, Kim RN, Kim A, Park HS	J Bacteriol	10.1128/JB.01394-10	2010	*
Metabolism	Characterization of Lactobacillus coryniformis DSM 20001T surface protein Cpf mediating coaggregation with and aggregation among pathogens.	Schachtsiek M, Hammes WP, Hertel C	Appl Environ Microbiol	10.1128/AEM.70.12.7078-7085.2004	2004	*

References

#8417

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20001

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35495 ; Curators of the CIP;
#50203 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30666

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75911

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID3271.1 )

#118760 Collection of Institut Pasteur ; Curators of the CIP; CIP 103133
* These data were automatically processed and therefore are not curated

Change proposal

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Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 DSM 20001

Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 DSM 20001

Change proposal

Change proposal