Secundilactobacillus collinoides (DSM 20515, ATCC 27612, NCIB 10925)

Name: Secundilactobacillus collinoides (DSM 20515, ATCC 27612, NCIB 10925)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6436

Type strain

Strain Designation Cl3a, C13a

Culture col. no. DSM 20515 ATCC 27612 NCIB 10925 CCUG 32259 NCIMB 10925 11 more

NCBI tax ID(s) 33960

Special Collections DSMZ CCUG JCM CIP

History <- ATCC <- J.G. Carr, Cl3a ATCC 27612 <-- J. G. Carr C13a. CIP <- 1987, DSM <- ATCC <- J.G. Carr: strain C13a

Links

Secundilactobacillus collinoides Cl3a is an anaerobe, mesophilic, Gram-positive prokaryote that was isolated from fermenting apple juice.

Gram-positive rod-shaped anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 92298

LMG 9194,ATCC 27612,CCRC 11649,CIP 103008,JCM 1123,LMG 11717,NCFB 2805,NCIMB 10925,CCUG 32259,NCDO 2746,NCIB 10925,CECT 922,VTT E-93060,CCM 7038,BCRC 11649,KCTC 5050,VTT E-95060,DSM 20515

@ref 20215

Last LPSN update 2026-02-09 11:19:13

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Secundilactobacillus

Species Secundilactobacillus collinoides

Full scientific name Secundilactobacillus collinoides (Carr and Davies 1972) Zheng et al. 2020

Synonyms (1)

Lactobacillus collinoides

BacDive ID	Other strains from **Secundilactobacillus collinoides** (1)	Type strain
6435	S. collinoides Bl4/aiii, DSM 20486, ATCC 27611, NCIB 10924

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
118705	positive	rod-shaped
125438	positive			91.795

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
8887	TOMATO JUICE MEDIUM (DSMZ Medium 264)	Medium recipe at MediaDive	Name: TOMATO JUICE MEDIUM (DSMZ Medium 264) Composition: Yeast extract 10.0 g/l Casein peptone 10.0 g/l Tomato juice Tween 80 Distilled water
38109	MEDIUM 40- for Lactobacillus and Leuconostoc		Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
118705	CIP Medium 41	Medium recipe at CIP
118705	CIP Medium 40	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
8887	positive	growth	26	mesophilic
38109	positive	growth	30	mesophilic
50935	positive	growth	30	mesophilic
67770	positive	growth	26	mesophilic
118705	positive	growth	15-30
118705	negative	growth	37
118705	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
50935	anaerobe
50935	microaerophile
125439	obligate aerobe	94.1

Spore formation

@ref	Spore formation	Confidence
125439		94.9

Murein

@ref	Murein short key	Type
8887	A11.31	A4alpha L-Lys-D-Asp

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
118705	17632 ChEBI	nitrate	-	reduction
118705	17632 ChEBI	nitrate	+	respiration
118705	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	+	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
118705	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
118705	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
118705	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
118705	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118705	ornithine decarboxylase	-	4.1.1.17
118705	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
68382	valine arylamidase	+		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	ppGpp biosynthesis	100	4 of 4
66794	acetoin degradation	100	3 of 3
66794	teichoic acid biosynthesis	100	1 of 1
66794	gluconeogenesis	100	8 of 8
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	L-lactaldehyde degradation	100	3 of 3
66794	methylglyoxal degradation	100	5 of 5
66794	acetate fermentation	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	ceramide biosynthesis	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	pentose phosphate pathway	90.91	10 of 11
66794	threonine metabolism	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	vitamin B1 metabolism	84.62	11 of 13
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	peptidoglycan biosynthesis	80	12 of 15
66794	flavin biosynthesis	80	12 of 15
66794	Entner Doudoroff pathway	80	8 of 10
66794	serine metabolism	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	purine metabolism	77.66	73 of 94
66794	vitamin B12 metabolism	76.47	26 of 34
66794	pyrimidine metabolism	75.56	34 of 45
66794	butanoate fermentation	75	3 of 4
66794	glutamate and glutamine metabolism	75	21 of 28
66794	isoleucine metabolism	75	6 of 8
66794	ketogluconate metabolism	75	6 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	NAD metabolism	72.22	13 of 18
66794	heme metabolism	71.43	10 of 14
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	photosynthesis	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	urea cycle	69.23	9 of 13
66794	phenylalanine metabolism	69.23	9 of 13
66794	sphingosine metabolism	66.67	4 of 6
66794	methane metabolism	66.67	2 of 3
66794	cysteine metabolism	66.67	12 of 18
66794	cyanate degradation	66.67	2 of 3
66794	glycolysis	64.71	11 of 17
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	citric acid cycle	64.29	9 of 14
66794	d-xylose degradation	63.64	7 of 11
66794	degradation of sugar alcohols	62.5	10 of 16
66794	methionine metabolism	61.54	16 of 26
66794	degradation of pentoses	60.71	17 of 28
66794	propionate fermentation	60	6 of 10
66794	3-chlorocatechol degradation	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	glycine betaine biosynthesis	60	3 of 5
66794	cellulose degradation	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	factor 420 biosynthesis	60	3 of 5
66794	degradation of sugar acids	60	15 of 25
66794	alanine metabolism	58.62	17 of 29
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	arginine metabolism	58.33	14 of 24
66794	non-pathway related	57.89	22 of 38
66794	propanol degradation	57.14	4 of 7
66794	oxidative phosphorylation	57.14	52 of 91
66794	histidine metabolism	55.17	16 of 29
66794	leucine metabolism	53.85	7 of 13
66794	lipid metabolism	51.61	16 of 31
66794	ribulose monophosphate pathway	50	1 of 2
66794	starch degradation	50	5 of 10
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	adipate degradation	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	CMP-KDO biosynthesis	50	2 of 4
66794	tryptophan metabolism	50	19 of 38
66794	glycogen biosynthesis	50	2 of 4
66794	cyclohexanol degradation	50	2 of 4
66794	sulfopterin metabolism	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	glutathione metabolism	50	7 of 14
66794	isoprenoid biosynthesis	46.15	12 of 26
66794	proline metabolism	45.45	5 of 11
66794	vitamin B6 metabolism	45.45	5 of 11
66794	lysine metabolism	45.24	19 of 42
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	d-mannose degradation	44.44	4 of 9
66794	mevalonate metabolism	42.86	3 of 7
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	arachidonate biosynthesis	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	phenol degradation	40	8 of 20
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	degradation of hexoses	38.89	7 of 18
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	arachidonic acid metabolism	33.33	6 of 18
66794	enterobactin biosynthesis	33.33	1 of 3
66794	allantoin degradation	33.33	3 of 9
66794	lipid A biosynthesis	33.33	3 of 9
66794	octane oxidation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	ascorbate metabolism	31.82	7 of 22
66794	sulfate reduction	30.77	4 of 13
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	myo-inositol biosynthesis	30	3 of 10
66794	coenzyme M biosynthesis	30	3 of 10
66794	tyrosine metabolism	28.57	4 of 14
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	biotin biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	nitrate assimilation	22.22	2 of 9

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118705	-	-	-	-	-	+	+	-	-	-	+	+	-	+	-	-	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
8887	-	-	-	-	+	+	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+
118705	not determinedn.d.	-	-	-	+	+	+	-	-	-	+/-	+	+	-	-	-	-	-	-	-	-	-	+/-	-	+/-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Engineered	#Food production

Isolation

@ref	Sample type
8887	fermenting apple juice
50935	Fermenting apple juice
67770	Fermenting apple juice
118705	Food, Fermenting apple juice

Taxonmaps

69479

Global distribution of 16S sequence LC062900 (>99% sequence identity) for Secundilactobacillus from Microbeatlas

Aquatic Samples	466
Soil Samples	286
Animal Samples	10122
Plant Samples	329
Total Samples	11203

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8887	1	Risk group (German classification) According to TRBA 466
118705	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM143597v1 assembly for Secundilactobacillus collinoides DSM 20515 = JCM 1123	scaffold	GCA_001435975	1423733.4	2663762609	1423733	45.8
67770	ASM131284v1 assembly for Secundilactobacillus collinoides DSM 20515 = JCM 1123	contig	GCA_001312845	1423733.3	2734481918	1423733	21.66

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Lactobacillus collinoides gene for 16S ribosomal RNA, partial sequence	AB005893	1549	33960
20218	Lactobacillus collinoides gene for 16S-23S rRNA intergenic spacer, partial sequence, 300 bp fragment, strain: JCM 1123	AB117955	298	33960
20218	Lactobacillus collinoides gene for 16S-23S rRNA intergenic spacer, partial sequence, 500 bp fragment, strain: JCM 1123	AB117957	520	33960
20218	Lactobacillus collinoides gene for 16S rRNA, partial sequence, strain: JCM 1123	AB289061	689	33960
20218	Lactobacillus collinoides gene for 16S ribosomal RNA, partial sequence	D31683	198	33960
67770	Lactobacillus collinoides gene for 16S ribosomal RNA, partial sequence, strain: JCM 1123	LC062900	1485	33960
124043	Lactobacillus collinoides gene for 16S rRNA, partial sequence, strain: NBRC 107765.	AB626078	1489	33960

GC content

@ref	GC-content (mol%)	Method
8887	46.0
67770	46
67770	46.1	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Secundilactobacillus collinoides DSM 20515 = JCM 1123
NCBI: GCA_001435975

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.90	no
125439	motility	BacteriaNetⓘ	no	59.30	no
125439	gram_stain	BacteriaNetⓘ	negative	61.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus collinoides DSM 20515 = JCM 1123
PATRIC: 1423733.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.80	no
125438	anaerobic	anaerobicⓘ	no	81.14	no
125438	spore-forming	spore-formingⓘ	no	74.93	no
125438	aerobic	aerobicⓘ	no	92.15	yes
125438	thermophilic	thermophileⓘ	no	95.56	yes
125438	flagellated	motile2+ⓘ	no	86.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Lactobacillus collinoides JCM1123(T): effects on mouse plasma cholesterol and isoflavonoids in the caecum.	Tamura M, Hori S, Nakagawa H	Antonie Van Leeuwenhoek	10.1007/s10482-009-9376-x	2009
Phylogeny	Rothia endophytica sp. nov., an actinobacterium isolated from Dysophylla stellata (Lour.) Benth.	Xiong ZJ, Zhang JL, Zhang DF, Zhou ZL, Liu MJ, Zhu WY, Zhao LX, Xu LH, Li WJ.	Int J Syst Evol Microbiol	10.1099/ijs.0.052522-0	2013
Phylogeny	Lactobacillus silagei sp. nov., isolated from orchardgrass silage.	Tohno M, Kitahara M, Irisawa T, Masuda T, Uegaki R, Ohkuma M, Tajima K	Int J Syst Evol Microbiol	10.1099/ijs.0.053124-0	2013
Phylogeny	Lactobacillus similis sp. nov., isolated from fermented cane molasses.	Kitahara M, Sakamoto M, Benno Y	Int J Syst Evol Microbiol	10.1099/ijs.0.011551-0	2009

References

#8887	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20515
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#38109	; Curators of the CIP;
#50935	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 32259
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118705	Collection of Institut Pasteur ; Curators of the CIP; CIP 103008
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Secundilactobacillus collinoides (DSM 20515, ATCC 27612, NCIB 10925)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Murein

Metabolite utilization

Metabolite tests

Enzymes

Pathway annotation

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001435975

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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