Name: Ligilactobacillus aviarius 75
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6420

Type strain:

Species: Ligilactobacillus aviarius

Strain Designation: 75

Culture col. no.: DSM 20655, ATCC 43234, CCUG 32230, JCM 5666, BCRC 14048, CIP 103144, KCTC 5063, LMG 10753, NBRC 102162, NCFB 2786, NCIMB 702786

Strain history: CIP <- 1988, DSM <- T. Mitsuoka: strain 75

NCBI tax ID(s): 1606 (species)

SI-ID 125561

LMG 10753, ATCC 43234, CCUG 32230, DSM 20655, JCM 5666, NCFB 2786, CIP 103144, CCRC 14048, NCIMB 702786, BCRC 14048, KCTC 5063, NBRC 102162

Other strains from Ligilactobacillus aviarius

L. aviarius 72, DSM 20654
L. aviarius Cla-CZ-67, DSM 109115

Section

Ligilactobacillus aviarius 75 is an anaerobe, mesophilic bacterium that was isolated from faeces of chicken.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Ligilactobacillus*
	Species	**Ligilactobacillus aviarius**
	Full Scientific Name (LPSN)	Ligilactobacillus aviarius (Fujisawa et al. 1985) Zheng et al. 2020

Synonym

Lactobacillus aviarius

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %95.047

[Ref.: #50913]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8875]

Culture medium

BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)

[Ref.: #8875]

Culture medium growth

[Ref.: #8875]

Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

MRS MEDIUM WITH CYSTEINE (DSMZ Medium 232)

[Ref.: #8875]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #8875]

Culture medium composition

expand / minimize

[Ref.: #35492]

Culture medium

MEDIUM 43 - for Lactobacillus hamsteri and Lactobacillus ruminis

[Ref.: #35492]

Culture medium growth

[Ref.: #35492]

Culture medium composition

expand / minimize

[Ref.: #116662]

Culture medium

CIP Medium 41

[Ref.: #116662]

Culture medium growth

[Ref.: #116662]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8875]	growth	37 °C
[Ref.: #35492]	growth	37 °C
[Ref.: #50913]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #8875]	Temperature range	mesophilic
[Ref.: #35492]	Temperature range	mesophilic
[Ref.: #50913]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8875]	Oxygen tolerance	anaerobe
[Ref.: #50913]	Oxygen tolerance	anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.986

[Ref.: #8875]	Murein short key	A11.31
[Ref.: #8875]	Murein types	A4alpha L-Lys-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68380]	D-mannose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #68380]	leucine arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	+		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	+		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8875]	14721	-	-	-	-	-	-	-	-	-	-	-	+	-	+/-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #116662]	9178	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #8875]	12730	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-	+	+	-	+	+	-	+/-	-	+/-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8875]	Sample type/isolated from	faeces of chicken

[Ref.: #50913]	Sample type/isolated from	Chicken feces

[Ref.: #67770]	Sample type/isolated from	Chicken feces

[Ref.: #116662]	Sample type/isolated from	Animal, Chicken, feces
* marker position based on {}

Isolation sources categories

#Host	#Birds	#Chicken
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC071825 (>99% sequence identity) for Ligilactobacillus from Microbeatlas

Aquatic Samples	1732
Soil Samples	1429
Animal Samples	22696
Plant Samples	582
Total Samples	26439

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8875]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116662]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Ligilactobacillus aviarius JCM 5666 gene for 16S ribosomal RNA, partial sequence	LC071825	1455	ENA	1606 tax ID
[Ref.: #20218]	Lactobacillus aviarius strain DSM 20655 16S ribosomal RNA gene, partial sequence	M58808	1504	ENA	1606 tax ID	*
[Ref.: #20218]	Lactobacillus aviarius subsp. aviarius gene for 16S rRNA, partial sequence, strain: JCM 5666	AB289044	691	ENA	147810 tax ID	*
[Ref.: #20218]	Lactobacillus aviarius subsp. aviarius gene for 16S rRNA, partial sequence, strain: NBRC 102162	AB326355	1488	ENA	147810 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Ligilactobacillus aviarius subsp. aviarius DSM 20655	GCA_001436315	scaffold	GenBank	1423821 tax ID
[Ref.: #67770]	Ligilactobacillus aviarius NBRC 102162	GCA_007989665	contig	GenBank	1606 tax ID
[Ref.: #66792]	Lactobacillus aviarius subsp. aviarius DSM 20655	1423821.4	wgs	PATRIC	1423821 tax ID	*
[Ref.: #66792]	Lactobacillus aviarius subsp. aviarius strain NBRC 102162	147810.5	wgs	PATRIC	1606 tax ID	*
[Ref.: #66792]	Ligilactobacillus aviarius aviarius DSM 20655	2700989116	draft	JGI IMG/M	1423821 tax ID	*

[Ref.: #8875]	GC-content	38.7 mol%
[Ref.: #67770]	GC-content	40.1 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Ligilactobacillus aviarius subsp. aviarius DSM 20655 DSM 20655 NCBI: GCA_001436315.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus aviarius subsp. aviarius DSM 20655 PATRIC: 1423821.4
[Ref.: #69480]	motile	no	95.568	no
[Ref.: #69480]	gram-positive	yes	96.289	no
[Ref.: #69480]	anaerobic	no	56.508	yes
[Ref.: #69480]	halophile	yes	85.13	no
[Ref.: #69480]	spore-forming	no	96.415	no
[Ref.: #69480]	glucose-util	yes	92.394	no
[Ref.: #69480]	thermophile	no	98.566	yes
[Ref.: #69480]	aerobic	no	96.86	yes
[Ref.: #69480]	flagellated	no	98.823	no
[Ref.: #69480]	glucose-ferment	yes	89.416	no

Availability in culture collections External links

[Ref.: #8875]

Culture collection no.

DSM 20655, ATCC 43234, CCUG 32230, JCM 5666, BCRC 14048, CIP 103144, KCTC 5063, LMG 10753, NBRC 102162, NCFB 2786, NCIMB 702786

[Ref.: #75895]

SI-ID 125561

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Biochemical characterization of two GH70 family 4,6-alpha-glucanotransferases with distinct product specificity from Lactobacillus aviarius subsp. aviarius DSM 20655.	Meng X, Gangoiti J, de Kok N, van Leeuwen SS, Pijning T, Dijkhuizen L	Food Chem	10.1016/j.foodchem.2018.01.154	2018	*

References

#8875

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20655

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35492 ; Curators of the CIP;
#50913 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 32230

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75895

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID125561.1 )

#116662 Collection of Institut Pasteur ; Curators of the CIP; CIP 103144
* These data were automatically processed and therefore are not curated

Change proposal

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Ligilactobacillus aviarius subsp. aviarius DSM 20655 DSM 20655

Lactobacillus aviarius subsp. aviarius DSM 20655

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