Ligilactobacillus aviarius 75 is an anaerobe bacterium that was isolated from faeces of chicken.
anaerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Bacillota |
| Class Bacilli |
| Order Lactobacillales |
| Family Lactobacillaceae |
| Genus Ligilactobacillus |
| Species Ligilactobacillus aviarius |
| Full scientific name Ligilactobacillus aviarius (Fujisawa et al. 1985) Zheng et al. 2020 |
| Synonyms (1) |
| BacDive ID | Other strains from Ligilactobacillus aviarius (2) | Type strain |
|---|---|---|
| 6419 | L. aviarius 72, DSM 20654 | |
| 160634 | L. aviarius Cla-CZ-67, DSM 109115 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 8875 | BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) | Medium recipe at MediaDive | Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water | ||
| 8875 | MRS MEDIUM WITH CYSTEINE (DSMZ Medium 232) | Medium recipe at MediaDive | Name: MRS MEDIUM WITH CYSTEINE (DSMZ Medium 232) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)2 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water | ||
| 35492 | MEDIUM 43 - for Lactobacillus hamsteri and Lactobacillus ruminis | Distilled water make up to (900.000 ml);Man Rogosa Sharp broth (55.000 g);Cysteine hydrochloride 5 % solution - M0172 (100.000 ml) | |||
| 116662 | CIP Medium 41 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125438 | 93.419 |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 8875 | A11.31 | A4alpha L-Lys-D-Asp |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68380 | 29016 ChEBI | arginine | - | hydrolysis | from API rID32A |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | - | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68380 | 16024 ChEBI | D-mannose | + | fermentation | from API rID32A |
| 68371 | 16988 ChEBI | D-ribose | - | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68380 | 29985 ChEBI | L-glutamate | - | degradation | from API rID32A |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | - | builds acid from | from API 50CH acid |
| 68380 | 17632 ChEBI | nitrate | - | reduction | from API rID32A |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68380 | 16634 ChEBI | raffinose | - | fermentation | from API rID32A |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68371 | 27082 ChEBI | trehalose | - | builds acid from | from API 50CH acid |
| 68380 | 27897 ChEBI | tryptophan | - | energy source | from API rID32A |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68380 | 16199 ChEBI | urea | - | hydrolysis | from API rID32A |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Chebi-ID | Metabolite | Production | |
|---|---|---|---|---|
| 68380 | 35581 ChEBI | indole | from API rID32A |
| @ref | Chebi-ID | Metabolite | Indole test | |
|---|---|---|---|---|
| 68380 | 35581 ChEBI | indole | - | from API rID32A |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68380 | alanine arylamidase | + | 3.4.11.2 | from API rID32A |
| 68380 | alkaline phosphatase | - | 3.1.3.1 | from API rID32A |
| 68380 | alpha-arabinosidase | - | 3.2.1.55 | from API rID32A |
| 68380 | alpha-fucosidase | - | 3.2.1.51 | from API rID32A |
| 68380 | alpha-galactosidase | - | 3.2.1.22 | from API rID32A |
| 68380 | alpha-glucosidase | - | 3.2.1.20 | from API rID32A |
| 68380 | arginine dihydrolase | - | 3.5.3.6 | from API rID32A |
| 68380 | beta-galactosidase | - | 3.2.1.23 | from API rID32A |
| 68380 | beta-Galactosidase 6-phosphate | - | from API rID32A | |
| 68380 | beta-glucosidase | - | 3.2.1.21 | from API rID32A |
| 68380 | beta-glucuronidase | - | 3.2.1.31 | from API rID32A |
| 68380 | glutamate decarboxylase | - | 4.1.1.15 | from API rID32A |
| 68380 | glutamyl-glutamate arylamidase | - | from API rID32A | |
| 68380 | glycin arylamidase | - | from API rID32A | |
| 68380 | L-arginine arylamidase | + | from API rID32A | |
| 68380 | leucine arylamidase | + | 3.4.11.1 | from API rID32A |
| 68380 | leucyl glycin arylamidase | - | 3.4.11.1 | from API rID32A |
| 68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API rID32A |
| 68380 | phenylalanine arylamidase | + | from API rID32A | |
| 68380 | proline-arylamidase | - | 3.4.11.5 | from API rID32A |
| 68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API rID32A |
| 68380 | tryptophan deaminase | - | 4.1.99.1 | from API rID32A |
| 68380 | tyrosine arylamidase | + | from API rID32A | |
| 68380 | urease | - | 3.5.1.5 | from API rID32A |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8875 | - | - | - | - | - | - | - | - | - | - | - | + | - | +/- | - | - | - | - | - | - | - | - | - | - | - | +/- | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| 116662 | not determinedn.d. | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Birds | #Chicken | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Global distribution of 16S sequence LC071825 (>99% sequence identity) for Ligilactobacillus from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM3952148v1 assembly for Ligilactobacillus aviarius JCM 5666 | scaffold | 1606 | 72.91 | ||||
| 67770 | ASM143631v1 assembly for Ligilactobacillus aviarius subsp. aviarius DSM 20655 | scaffold | 1423821 | 70.47 | ||||
| 67770 | ASM798966v1 assembly for Ligilactobacillus aviarius NBRC 102162 | contig | 1606 | 65.62 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Lactobacillus aviarius strain DSM 20655 16S ribosomal RNA gene, partial sequence | M58808 | 1504 | 1606 | ||
| 20218 | Ligilactobacillus aviarius JCM 5666 gene for 16S rRNA, partial sequence | AB289044 | 691 | 147810 | ||
| 20218 | Ligilactobacillus aviarius NBRC 102162 gene for 16S rRNA, partial sequence | AB326355 | 1488 | 147810 | ||
| 67770 | Ligilactobacillus aviarius JCM 5666 gene for 16S ribosomal RNA, partial sequence | LC071825 | 1455 | 1606 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 56.80 | no |
| 125439 | motility | BacteriaNetⓘ | no | 74.00 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 74.40 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | microaerophile | 97.70 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 92.91 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 57.72 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 93.42 | no |
| 125438 | aerobic | aerobicⓘ | no | 94.38 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 95.50 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 89.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Insights into Broad-Specificity Starch Modification from the Crystal Structure of Limosilactobacillus Reuteri NCC 2613 4,6-alpha-Glucanotransferase GtfB. | Pijning T, Gangoiti J, Te Poele EM, Borner T, Dijkhuizen L. | J Agric Food Chem | 10.1021/acs.jafc.1c05657 | 2021 | ||
| Phylogeny | Full-length 16S rRNA sequencing revealed an altered microbiome diversity and composition of the jejunum and cecum in chicken infected with Eimeria necatrix. | Xue N, Feng Q, Zhu Y, Cheng C, Wang F, Liu D, Su S, Xu J, Hu J, Tao J. | Vet Parasitol | 10.1016/j.vetpar.2025.110458 | 2025 | |
| Inactivated Lactiplantibacillus plantarum Ps-8 enhances growth performance and intestinal health in broiler chickens via gut microbiota and serum metabolite modulation. | Jiao Y, Huang W, Zhang Q, Liu L, Zhao J, Chen Y. | Poult Sci | 10.1016/j.psj.2025.105611 | 2025 | ||
| Genetics | Host specific adaptations of Ligilactobacillus aviarius to poultry. | Rios Galicia B, Saenz JS, Yergaliyev T, Camarinha-Silva A, Seifert J. | Curr Res Microb Sci | 10.1016/j.crmicr.2023.100199 | 2023 | |
| Phylogeny | Rearing system and immune status influence the small intestinal microbiota of IPB-D3 chickens: A full-length 16S rRNA metagenomic approach. | Kuswandi W, Budiman C, Khaerunnisa I, Sumantri C. | Vet World | 10.14202/vetworld.2025.2206-2221 | 2025 | |
| A self-designed Chinese herbal formula alleviates GAstV infection-induced gout in goslings by inhibiting xanthine oxidase (XOD) and regulating intestinal microbiota. | Zhang X, Zhu M, Cui H, Fan J, Yang M, Jin Y, Mao S, Zhang H. | Poult Sci | 10.1016/j.psj.2025.106062 | 2025 | ||
| Effects of dietary Bacillus velezensis fermented soybean hull supplementation on antioxidant capacity, suppressing pro-inflammatory, and modulating microbiota composition in broilers. | Chen YH, Li YC, Chang SC, Lin MJ, Lin LJ, Lee TT. | Poult Sci | 10.1016/j.psj.2025.104827 | 2025 | ||
| Beneficial Effects of Bacillus amyloliquefaciens D1 Soy Milk Supplementation on Serum Biochemical Indexes and Intestinal Health of Bearded Chickens. | Du L, Chen W, Wang J, Huang L, Zheng Q, Chen J, Wang L, Cai C, Zhang X, Wang L, Zhong Q, Zhong W, Fang X, Liao Z. | Microorganisms | 10.3390/microorganisms11071660 | 2023 | ||
| Phylogeny | Canaries' Microbiota: The Gut Bacterial Communities along One Female Reproductive Cycle. | Hattab J, Marruchella G, Sibra A, Tiscar PG, Todisco G. | Microorganisms | 10.3390/microorganisms11092289 | 2023 | |
| Kombucha tea as an anti-hyperglycemic agent in humans with diabetes - a randomized controlled pilot investigation. | Mendelson C, Sparkes S, Merenstein DJ, Christensen C, Sharma V, Desale S, Auchtung JM, Kok CR, Hallen-Adams HE, Hutkins R. | Front Nutr | 10.3389/fnut.2023.1190248 | 2023 | ||
| The active core microbiota of two high-yielding laying hen breeds fed with different levels of calcium and phosphorus. | Roth C, Sims T, Rodehutscord M, Seifert J, Camarinha-Silva A. | Front Physiol | 10.3389/fphys.2022.951350 | 2022 | ||
| Characterizing the gut microbiome of broilers raised under conventional and no antibiotics ever practices. | Novoa Rama E, Bailey M, Kumar S, Leone C, den Bakker HC, Thippareddi H, Singh M. | Poult Sci | 10.1016/j.psj.2023.102832 | 2023 | ||
| Lactiplantibacillus plantarum, lactiplantibacillus pentosus and inulin meal inclusion boost the metagenomic function of broiler chickens. | Ferrocino I, Biasato I, Dabbou S, Colombino E, Rantsiou K, Squara S, Gariglio M, Capucchio MT, Gasco L, Cordero CE, Liberto E, Schiavone A, Cocolin L. | Anim Microbiome | 10.1186/s42523-023-00257-5 | 2023 | ||
| Pathogenicity | Evidence of host specificity in Lactobacillus johnsonii genomes and its influence on probiotic potential in poultry. | Johnson A, Miller EA, Weber B, Figueroa CF, Aguayo JM, Johny AK, Noll S, Brannon J, Kozlowicz B, Johnson TJ. | Poult Sci | 10.1016/j.psj.2023.102858 | 2023 | |
| Convergence of the turkey gut microbiota following cohabitation under commercial settings. | Miller EA, Winfield B, Weber BP, Flores-Figueroa C, Munoz-Aguayo J, Huisinga J, Johnson TJ. | J Anim Sci Biotechnol | 10.1186/s40104-021-00580-4 | 2021 | ||
| Ratio of Histamine-Producing/Non-Histamine-Producing Subgroups of Tetragenococcus halophilus Determines the Histamine Accumulation during Spontaneous Fermentation of Soy Sauce. | Ma J, Nie Y, Zhang L, Xu Y. | Appl Environ Microbiol | 10.1128/aem.01884-22 | 2023 | ||
| Pathogenicity | Phylotype-Level Characterization of Complex Communities of Lactobacilli Using a High-Throughput, High-Resolution Phenylalanyl-tRNA Synthetase (pheS) Gene Amplicon Sequencing Approach. | Silvaraju S, Menon N, Fan H, Lim K, Kittelmann S. | Appl Environ Microbiol | 10.1128/aem.02191-20 | 2020 | |
| Metabolism | Biochemical characterization of two GH70 family 4,6-alpha-glucanotransferases with distinct product specificity from Lactobacillus aviarius subsp. aviarius DSM 20655. | Meng X, Gangoiti J, de Kok N, van Leeuwen SS, Pijning T, Dijkhuizen L | Food Chem | 10.1016/j.foodchem.2018.01.154 | 2018 | |
| Ligilactobacillus cholophilus sp. nov., isolated from pickled potherb mustard (Brassica juncea Coss.). | Ren Q, Wang D, Han J, Wang J, Liu Z, Wu Z. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.006160 | 2023 |
| #8875 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20655 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #35492 | ; Curators of the CIP; |
| #50913 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 32230 |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68371 | Automatically annotated from API 50CH acid . |
| #68380 | Automatically annotated from API rID32A . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #116662 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103144 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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