Name: Lachnoanaerobaculum orale N1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6378

Type strain:

Species: Lachnoanaerobaculum orale

Strain Designation: N1

Culture col. no.: DSM 24553, CCUG 60305

Strain history: <- M. Hedberg, Umea University, Institution of Clinical Microbiology, Div. of Immunology; N1 <- M. Hedberg, Karolinska Institute, Dept. IMPI, Stockholm, Sweden

NCBI tax ID(s): 979627 (species)

SI-ID 403494

DSM 24553, CCUG 60305

Other strains from Lachnoanaerobaculum orale

L. orale CCUG 18889

Section

Lachnoanaerobaculum orale N1 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from saliva from a healthy young man.

Gram-positive
rod-shaped
spore-forming
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Lachnoanaerobaculum*
	Species	**Lachnoanaerobaculum orale**
	Full Scientific Name (LPSN)	Lachnoanaerobaculum orale Hedberg et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30331]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #30331]	Cell shape	rod-shaped

[Ref.: #62276]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17695]

Culture medium

PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)

[Ref.: #17695]

Culture medium growth

[Ref.: #17695]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17695]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17695]	growth	37 °C
[Ref.: #30331]	growth	37 °C
[Ref.: #62276]	growth	37 °C

[Ref.: #17695]	Temperature range	mesophilic
[Ref.: #30331]	Temperature range	mesophilic
[Ref.: #62276]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30331]			optimum	6.75

Information on physiology and metabolism Physiology and metabolism

[Ref.: #17695]	Oxygen tolerance	anaerobe
[Ref.: #30331]	Oxygen tolerance	anaerobe
[Ref.: #62276]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #30331]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.896

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30331]		alpha-galactosidase	+	3.2.1.22

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17695]	Sample type/isolated from	saliva from a healthy young man
[Ref.: #17695]	Geographic location (country and/or sea, region)	Stockholm
[Ref.: #17695]	Country	Sweden
[Ref.: #17695]	Country ISO 3 Code	SWE
[Ref.: #17695]	Continent	Europe

[Ref.: #62276]	Sample type/isolated from	Human saliva
[Ref.: #62276]	Sampling date	2010-09-01
[Ref.: #62276]	Geographic location (country and/or sea, region)	Umeå
[Ref.: #62276]	Country	Sweden
[Ref.: #62276]	Country ISO 3 Code	SWE
[Ref.: #62276]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body Product	#Oral cavity and Airways	#Saliva
#Host	#Human	#Male

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17695]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17695]	Lachnoanaerobaculum orale strain N1 16S ribosomal RNA gene, partial sequence	HQ877677	1435	ENA	979627 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lachnoanaerobaculum orale DSM 24553	GCA_003862485	scaffold	GenBank	979627 tax ID	*
[Ref.: #66792]	Lachnoanaerobaculum orale strain DSM 24553	979627.3	wgs	PATRIC	979627 tax ID	*

[Ref.: #17695]	GC-content	38 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30331]	GC-content	38 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lachnoanaerobaculum orale DSM 24553 NCBI: GCA_003862485.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lachnoanaerobaculum orale DSM 24553 NCBI: GCA_003862485.1
[Ref.: #69480]	flagellated	no	92.879	no
[Ref.: #69480]	gram-positive	yes	88.564	no
[Ref.: #69480]	anaerobic	yes	98.98	yes
[Ref.: #69480]	aerobic	no	98.548	no
[Ref.: #69480]	halophile	no	79.903	no
[Ref.: #69480]	spore-forming	no	56.904	yes
[Ref.: #69480]	thermophile	no	98.631	no
[Ref.: #69480]	glucose-util	yes	88.92	no
[Ref.: #69480]	motile	no	88.459	no
[Ref.: #69480]	glucose-ferment	yes	80.215	no

Availability in culture collections External links

[Ref.: #17695]

Culture collection no.

DSM 24553, CCUG 60305

[Ref.: #75851]

SI-ID 403494

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lachnoanaerobaculum gen. nov., a new genus in the Lachnospiraceae: characterization of Lachnoanaerobaculum umeaense gen. nov., sp. nov., isolated from the human small intestine, and Lachnoanaerobaculum orale sp. nov., isolated from saliva, and reclassification of Eubacterium saburreum (Prevot 1966) Holdeman and Moore 1970 as Lachnoanaerobaculum saburreum comb. nov.	Hedberg ME, Moore ERB, Svensson-Stadler L, Horstedt P, Baranov V, Hernell O, Wai SN, Hammarstrom S, Hammarstrom ML	Int J Syst Evol Microbiol	10.1099/ijs.0.033613-0	2012	*

References

#17695

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24553

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30331

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26672 (see below)

#62276 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60305

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75851

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403494.1 )

#26672

IJSEM 2685 2012 ( DOI 10.1099/ijs.0.033613-0 , PubMed 22228654 )

* These data were automatically processed and therefore are not curated

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Lachnoanaerobaculum orale DSM 24553

Lachnoanaerobaculum orale DSM 24553

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