Terrabacter terrigena (DSM 23140, CCUG 57508, JCM 31984)

Name: Terrabacter terrigena (DSM 23140, CCUG 57508, JCM 31984)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6289

Type strain

Strain Designation ON10

Culture col. no. DSM 23140 CCUG 57508 JCM 31984 KCTC 19602 ON10

NCBI tax ID(s) 574718

Special Collections DSMZ CCUG JCM KCTC Wink compendium Literature strains

History DSMZ <- KCTC <- J. H. Yoon, KRIBB JCM <-- DSM 23140 <-- KCTC 19602 <-- J. H. Yoon; KRIBB, South Korea; ON10. KCTC <- JH Yoon, KRIBB

Links

Terrabacter terrigena ON10 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from soil around a wastewater treatment plant.

Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 405333

KCTC 19602,JCM 31984,DSM 23140,CCUG 57508

@ref 20215

Last LPSN update 2026-05-29 08:26:22

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Intrasporangiaceae

Genus Terrabacter

Species Terrabacter terrigena

Full scientific name Terrabacter terrigena Yoon et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29302	positive	3 µm	0.45 µm	rod-shaped
67771	positive
125439	positive				98.286

Colony morphology

61354

Incubation period7 days

Pigmentation

29302

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16725	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
16725	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16725	positive	growth	28
18350	positive	optimum	28
29302	positive	growth	10-37
29302	positive	optimum	30
61354	positive	growth	30
67770	positive	growth	28
67771	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
29302	positive	optimum	6.5
29302	positive	growth	5-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29302	aerobe
61354	aerobe
67771	aerobe
125439	obligate aerobe	98.329

Spore formation

29302

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29302	NaCl	positive	growth	0-3 %
29302	NaCl	positive	optimum	0.5 %

Observation

67770

Observationquinones: MK-8(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29302	17128 ChEBI	adipate	+	carbon source
18350	22599 ChEBI	arabinose	+/-
29302	17057 ChEBI	cellobiose	+	carbon source
18350	62968 ChEBI	cellulose	-
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
29302	4853 ChEBI	esculin	+	hydrolysis
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
18350	28757 ChEBI	fructose	+
29302	28757 ChEBI	fructose	+	carbon source
29302	28260 ChEBI	galactose	+	carbon source
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
18350	17234 ChEBI	glucose	+
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
29302	18403 ChEBI	L-arabitol	+	carbon source
29302	17716 ChEBI	lactose	+	carbon source
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
18350	29864 ChEBI	mannitol	+
29302	29864 ChEBI	mannitol	+	carbon source
29302	37684 ChEBI	mannose	+	carbon source
29302	28053 ChEBI	melibiose	+	carbon source
18350	17268 ChEBI	myo-inositol	+/-
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
18350	16634 ChEBI	raffinose	+/-
29302	16634 ChEBI	raffinose	+	carbon source
18350	26546 ChEBI	rhamnose	+/-
29302	26546 ChEBI	rhamnose	+	carbon source
29302	33942 ChEBI	ribose	+	carbon source
29302	30911 ChEBI	sorbitol	+	carbon source
18350	17992 ChEBI	sucrose	+
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
29302	27082 ChEBI	trehalose	+	carbon source
29302	53424 ChEBI	tween 20	+	carbon source
29302	53423 ChEBI	tween 40	+	carbon source
29302	53425 ChEBI	tween 60	+	carbon source
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
18350	18222 ChEBI	xylose	-
29302	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68379	beta-galactosidase	+	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	+	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne
68382	valine arylamidase	-		from API zym

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
18350	-	-	-	-	-	+	-	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
18350	not determinedn.d.	-	-	+	-	+	-	-	-	-	+	-	+	+	+	-	-	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Water treatment plant
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
16725	soil around a wastewater treatment plant		Daejeon	Republic of Korea	KOR	Asia
61354	Soil around wastewater treatment plant	2006-01-01	Taejon	Republic of Korea	KOR	Asia
67770	Soil around a wastewater treatment plant			Republic of Korea	KOR	Asia
67771	From soil		Daejeon	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence FJ423552 (>99% sequence identity) for Terrabacter from Microbeatlas

Aquatic Samples	77
Soil Samples	391
Animal Samples	185
Plant Samples	25
Total Samples	678

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16725	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4267608v1 assembly for Terrabacter terrigena CCUG 57508	contig	GCA_042676085	574718	69.93

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16725	Terrabacter terrigena strain ON10 16S ribosomal RNA gene, partial sequence	FJ423552	1477		574718

GC content

@ref	GC-content (mol%)	Method
16725	71.6	high performance liquid chromatography (HPLC)
29302	71.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4267608v1 assembly for Terrabacter terrigena CCUG 57508
NCBI: GCA_042676085

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.33	no
125439	gram_stain	BacteriaNetⓘ	positive	98.29	no
125439	motility	BacteriaNetⓘ	no	78.86	no
125439	spore_formation	BacteriaNetⓘ	no	70.80	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Terrabacter terrigena sp. nov., isolated from soil.	Yoon JH, Park S, Kang SJ, Jung YT, Kim W	Int J Syst Evol Microbiol	10.1099/ijs.0.010553-0	2009

References

#16725	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23140
#18350	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25716	IJSEM 2798 2009 ( DOI 10.1099/ijs.0.010553-0 , PubMed 19628617 )
#29302	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25716
#61354	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57508
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Terrabacter terrigena (DSM 23140, CCUG 57508, JCM 31984)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042676085

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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