Name: Terrabacter aerolatus 5516J-36
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6288

Type strain:

Species: Terrabacter aerolatus

Strain Designation: 5516J-36

Culture col. no.: DSM 18562, CIP 109801, KACC 20556, JCM 16379, KCTC 39580, NBRC 106305

Strain history: CIP <- 2008, DSMZ <- S.W. Kwon, KACC <- H.Y. Weon, Nat. Inst. Agric. Sci. Tech., Suwon, Korea: strain 5516J-36

NCBI tax ID(s): 422442 (species)

SI-ID 309561

DSM 18562, KACC 20556, CIP 109801, JCM 16379

Special Collections

Section

When using BacDive for research please cite our paper

Terrabacter aerolatus 5516J-36 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from air sample.

Gram-positive
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Intrasporangiaceae*
	Genus	*Terrabacter*
	Species	**Terrabacter aerolatus**
	Full Scientific Name (LPSN)	Terrabacter aerolatus Weon et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32150]	Gram stain	positive
[Ref.: #116076]	Gram stain	positive
[Ref.: #125439]	Gram stain	positive Confidence in %98.8

[Ref.: #32150]	Cell length	1.0-3.5 µm

[Ref.: #32150]	Cell width	0.9-1.0 µm

[Ref.: #32150]	Cell shape	rod-shaped
[Ref.: #116076]	Cell shape	rod-shaped

[Ref.: #116076]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7590]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #7590]

Culture medium growth

[Ref.: #7590]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7590]

Culture medium composition

expand / minimize

[Ref.: #37844]

Culture medium

MEDIUM 338 - for Sanguibacter keddieii

[Ref.: #37844]

Culture medium growth

[Ref.: #37844]

Culture medium composition

expand / minimize

[Ref.: #7590]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #7590]

Culture medium growth

[Ref.: #7590]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7590]

Culture medium composition

expand / minimize

[Ref.: #116076]

Culture medium

CIP Medium 338

[Ref.: #116076]

Culture medium growth

[Ref.: #116076]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7590]	growth	28 °C
[Ref.: #32150]	growth	5-35 °C
[Ref.: #32150]	optimum	30 °C
[Ref.: #37844]	growth	30 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #32150]			optimum	7.5
[Ref.: #32150]			growth	4-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32150]	Oxygen tolerance	aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %95.2

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32150]		NaCl		growth	0-5	%
[Ref.: #32150]		NaCl		optimum	2.5	%

[Ref.: #7590]	Murein short key	A41.02
[Ref.: #7590]	Murein types	A3gamma LL-Dpm-Gly₃; alpha-carboxyl group of D-Glu substituted by Gly

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32150]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #32150]	acetate ChEBI	+	carbon source
[Ref.: #32150]	adipate ChEBI	+	carbon source
[Ref.: #32150]	alanine ChEBI	+	carbon source
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32150]	glucose ChEBI	+	carbon source
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32150]	glycogen ChEBI	+	carbon source
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32150]	histidine ChEBI	+	carbon source
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32150]	malonate ChEBI	+	carbon source
[Ref.: #32150]	maltose ChEBI	+	carbon source
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32150]	mannitol ChEBI	+	carbon source
[Ref.: #32150]	mannose ChEBI	+	carbon source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32150]	nitrate ChEBI	+	reduction
[Ref.: #116076]	nitrate ChEBI	+	reduction
[Ref.: #116076]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32150]	propionate ChEBI	+	carbon source
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32150]	sucrose ChEBI	+	carbon source
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32150]	valerate ChEBI	+	carbon source
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #116076]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32150]	catalase	+	1.11.1.6
[Ref.: #116076]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116076]	oxidase	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #116076]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #116076]	11656	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116076]	12121	-	-	+	+	-	+	+	+	+	-	+	+	+	+	-	+	+	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7590]	Sample type/isolated from	air sample
[Ref.: #7590]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #7590]	Country	Republic of Korea
[Ref.: #7590]	Country ISO 3 Code	KOR
[Ref.: #7590]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Air
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jeju region
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #116076]	Sample type/isolated from	Environment, Air sample
[Ref.: #116076]	Geographic location (country and/or sea, region)	Jeju Island
[Ref.: #116076]	Country	Republic of Korea
[Ref.: #116076]	Country ISO 3 Code	KOR
[Ref.: #116076]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Air

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF212039 (>99% sequence identity) for Terrabacter from Microbeatlas

Aquatic Samples	491
Soil Samples	2840
Animal Samples	1084
Plant Samples	134
Total Samples	4549

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7590]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116076]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7590]	Terrabacter aerolatus strain 5516J-36 16S ribosomal RNA gene, partial sequence	EF212039	1400	GenBank ENA	422442 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Terrabacter aerolatus NBRC 106305	GCA_007991735	contig	GenBank ENA	422442 tax ID	*
[Ref.: #66792]	Terrabacter aerolatus strain NBRC 106305	422442.3	wgs	PATRIC	422442 tax ID	*

[Ref.: #7590]	GC-content	71.7 mol%
[Ref.: #67770]	GC-content	71.7 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Terrabacter aerolatus strain NBRC 106305 PATRIC: 422442.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	85.981	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	97.884	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	52.576	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	86.508	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	96.5	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	74.6	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Terrabacter aerolatus NBRC 106305 NCBI: GCA_007991735
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	81.7
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	63.9
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	98.8
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	95.2

Availability in culture collections External links

[Ref.: #7590]

Culture collection no.

DSM 18562, CIP 109801, KACC 20556, JCM 16379, KCTC 39580, NBRC 106305

[Ref.: #75763]

SI-ID 309561

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Terrabacter aerolatus sp. nov., isolated from an air sample.	Weon HY, Schumann P, Kroppenstedt RM, Kim BY, Song J, Kwon SW, Go SJ, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.65040-0	2007	*

References

#7590

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18562

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32150

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28393 (see below)

#37844 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75763

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID309561.1 )

#116076 Collection of Institut Pasteur ; Curators of the CIP; CIP 109801

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#28393

IJSEM 2106 2007 ( DOI 10.1099/ijs.0.65040-0 , PubMed 17766880 )

* These data were automatically processed and therefore are not curated

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Terrabacter aerolatus strain NBRC 106305

Terrabacter aerolatus NBRC 106305

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Change proposal