Name: Terrabacter lapilli LR-26
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6287

Type strain:

Species: Terrabacter lapilli

Strain Designation: LR-26

Culture col. no.: DSM 18583, JBRI 2002, KCTC 19199, JCM 15628

Strain history: <- SD Lee, Cheju Univ.

NCBI tax ID(s): 436231 (species)

SI-ID 400001

DSM 18583

Special Collections

Section

Terrabacter lapilli LR-26 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from stone, agricultural field.

Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Intrasporangiaceae*
	Genus	*Terrabacter*
	Species	**Terrabacter lapilli**
	Full Scientific Name (LPSN)	Terrabacter lapilli Lee et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32472]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #32472]	Cell length	1.2 µm

[Ref.: #32472]	Cell width	0.4 µm

[Ref.: #32472]	Cell shape	rod-shaped

[Ref.: #32472]	Motility	no

[Ref.: #19766]	Colony color	Saffron yellow (1017)
[Ref.: #19766]	Incubation period	10-14 days
[Ref.: #19766]	Cultivation medium used	ISP 2

[Ref.: #19766]	Colony color	Saffron yellow (1017)
[Ref.: #19766]	Incubation period	10-14 days
[Ref.: #19766]	Cultivation medium used	ISP 3

[Ref.: #19766]	Colony color	Saffron yellow (1017)
[Ref.: #19766]	Incubation period	10-14 days
[Ref.: #19766]	Cultivation medium used	ISP 4

[Ref.: #19766]	Colony color	Saffron yellow (1017)
[Ref.: #19766]	Incubation period	10-14 days
[Ref.: #19766]	Cultivation medium used	ISP 5

[Ref.: #19766]	Colony color	Saffron yellow (1017)
[Ref.: #19766]	Incubation period	10-14 days
[Ref.: #19766]	Cultivation medium used	ISP 6

[Ref.: #19766]	Colony color	Saffron yellow (1017)
[Ref.: #19766]	Incubation period	10-14 days
[Ref.: #19766]	Cultivation medium used	ISP 7

[Ref.: #32472]

Pigment production

yes

[Ref.: #19766]	Multicellular complex forming ability	no
[Ref.: #19766]	Medium Name (multicellularity)	ISP 2

[Ref.: #19766]	Multicellular complex forming ability	no
[Ref.: #19766]	Medium Name (multicellularity)	ISP 3

[Ref.: #19766]	Multicellular complex forming ability	no
[Ref.: #19766]	Medium Name (multicellularity)	ISP 4

[Ref.: #19766]	Multicellular complex forming ability	no
[Ref.: #19766]	Medium Name (multicellularity)	ISP 5

[Ref.: #19766]	Multicellular complex forming ability	no
[Ref.: #19766]	Medium Name (multicellularity)	ISP 6

[Ref.: #19766]	Multicellular complex forming ability	no
[Ref.: #19766]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7593]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #7593]

Culture medium growth

[Ref.: #7593]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7593]

Culture medium composition

expand / minimize

[Ref.: #7593]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7593]

Culture medium growth

[Ref.: #7593]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #19766]

Culture medium

ISP 2

[Ref.: #19766]

Culture medium growth

[Ref.: #19766]

Culture medium composition

expand / minimize

[Ref.: #19766]

Culture medium

ISP 3

[Ref.: #19766]

Culture medium growth

[Ref.: #19766]

Culture medium composition

expand / minimize

[Ref.: #19766]

Culture medium

ISP 4

[Ref.: #19766]

Culture medium growth

[Ref.: #19766]

Culture medium composition

expand / minimize

[Ref.: #19766]

Culture medium

ISP 5

[Ref.: #19766]

Culture medium growth

[Ref.: #19766]

Culture medium composition

expand / minimize

[Ref.: #19766]

Culture medium

ISP 6

[Ref.: #19766]

Culture medium growth

[Ref.: #19766]

Culture medium composition

expand / minimize

[Ref.: #19766]

Culture medium

ISP 7

[Ref.: #19766]

Culture medium growth

[Ref.: #19766]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7593]	growth	28 °C
[Ref.: #19766]	optimum	28 °C
[Ref.: #32472]	growth	10-40 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #32472]			growth	4.1-12.1

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32472]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32472]		NaCl		growth	<3	%

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #32472]	gluconate ChEBI	+	carbon source
[Ref.: #32472]	glucose ChEBI	+	carbon source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #32472]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #32472]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32472]	nitrate ChEBI	+	reduction
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32472]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #32472]	gelatinase	+
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #19766]	306	-	-	-	-	-	+	-	-	+	+	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19766]	590	not determinedn.d.	-	+	+	-	+	-	-	-	-	-	-	+	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7593]	Sample type/isolated from	stone, agricultural field
[Ref.: #7593]	Country	Republic of Korea
[Ref.: #7593]	Country ISO 3 Code	KOR
[Ref.: #7593]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Small stone from an agricultural field in Jeju
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From a little stone
[Ref.: #67771]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM690744 (>99% sequence identity) for Terrabacter from Microbeatlas

Aquatic Samples	491
Soil Samples	2840
Animal Samples	1084
Plant Samples	134
Total Samples	4549

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7593]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19766]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7593]	Terrabacter lapilli partial 16S rRNA gene, type strain LR-26T	AM690744	1487	GenBank ENA	436231 tax ID

[Ref.: #7593]	GC-content	72.6 mol%
[Ref.: #67770]	GC-content	72.6 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #7593]

Culture collection no.

DSM 18583, JBRI 2002, KCTC 19199, JCM 15628

[Ref.: #75762]

SI-ID 400001

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Terrabacter ginsengisoli sp. nov., isolated from ginseng cultivating soil.	Jin MF, Quan XT, Siddiqi MZ, Liu QZ, Yu HS, Im WT	J Microbiol	10.1007/s12275-018-8098-z	2018	*
Phylogeny	Terrabacter carboxydivorans sp. nov., a carbon monoxide-oxidizing actinomycete.	Kim SM, Park SW, Park ST, Kim YM	Int J Syst Evol Microbiol	10.1099/ijs.0.020826-0	2010	*
Phylogeny	Terrabacter aeriphilus sp. nov., isolated from an air sample.	Weon HY, Son JA, Yoo SH, Kim BY, Kwon SW, Schumann P, Kroppenstedt R, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.016444-0	2009	*
Phylogeny	Terrabacter lapilli sp. nov., an actinomycete isolated from stone.	Lee JE, Seo JP, Lee DW, Ko YH, Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.65541-0	2008	*

References

#7593

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18583

#19766

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32472

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28693 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75762

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400001.1 )

#28693

IJSEM 1084 2008 ( DOI 10.1099/ijs.0.65541-0 , PubMed 18450693 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Terrabacter lapilli in external resources:
SILVA
BRENDA
PANGAEA
GBIF