Name: Helicobacter suis HS1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6109

Type strain:

Species: Helicobacter suis

Strain Designation: HS1

Culture col. no.: DSM 19735, LMG 23995

Strain history: <- M. Baele; HS1 {2007}

NCBI tax ID(s): 104628 (species)

SI-ID 354309

DSM 19735, LMG 23995, LMG 24794

Section

Helicobacter suis HS1 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from pig, gastric mucosa.

Gram-negative
motile
spiral-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Helicobacteraceae*
	Genus	*Helicobacter*
	Species	**Helicobacter suis**
	Full Scientific Name (LPSN)	Helicobacter suis Baele et al. 2008

Synonym

"Candidatus Helicobacter suis"

Information on morphological and physiological properties Morphology

[Ref.: #32209]	Gram stain	negative

[Ref.: #32209]	Cell length	4.5 µm

[Ref.: #32209]	Cell width	1.05 µm

[Ref.: #32209]	Cell shape	spiral-shaped

[Ref.: #32209]	Motility	yes

[Ref.: #8132]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8132]

Culture medium

HELICOBACTER MEDIUM (DSMZ Medium 1279)

[Ref.: #8132]

Culture medium growth

[Ref.: #8132]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8132]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8132]			growth	37 °C
[Ref.: #32209]			growth	37 °C

[Ref.: #8132]	Temperature range	mesophilic
[Ref.: #32209]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8132]	Oxygen tolerance	anaerobe
[Ref.: #32209]	Oxygen tolerance	microaerophile

[Ref.: #32209]

Ability of spore formation

	Enzyme	Enzyme activity	EC number
[Ref.: #32209]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32209]	catalase	+	1.11.1.6
[Ref.: #32209]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32209]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8132]	Sample type/isolated from	pig, gastric mucosa
[Ref.: #8132]	Country	Belgium
[Ref.: #8132]	Country ISO 3 Code	BEL
[Ref.: #8132]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Suidae (Pig,Swine)
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF204589 (>99% sequence identity) for Helicobacter suis subclade from Microbeatlas

Aquatic Samples	63
Soil Samples	79
Animal Samples	3892
Plant Samples	40
Total Samples	4074

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8132]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8132]	Helicobacter suis HS1 16S ribosomal RNA gene, partial sequence	EF204589	1451	ENA	710393 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Helicobacter suis DSM 19735	GCA_017979375	contig	GenBank	104628 tax ID	*
[Ref.: #66792]	Helicobacter suis HS1	GCA_000187625	contig	GenBank	710393 tax ID	*
[Ref.: #66792]	Helicobacter suis HS1	710393.3	wgs	PATRIC	710393 tax ID	*
[Ref.: #66792]	Helicobacter suis strain DSM 19735	104628.53	wgs	PATRIC	104628 tax ID	*
[Ref.: #66792]	Helicobacter suis HS1	649989954	draft	JGI IMG/M	710393 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Helicobacter suis HS1 PATRIC: 710393.3
[Ref.: #69480]	gram-positive	no	99.193	yes
[Ref.: #69480]	anaerobic	no	87.884	no
[Ref.: #69480]	halophile	no	86.245	no
[Ref.: #69480]	spore-forming	no	96.793	yes
[Ref.: #69480]	glucose-util	no	77.026	no
[Ref.: #69480]	thermophile	yes	64.546	yes
[Ref.: #69480]	flagellated	no	53.887	no
[Ref.: #69480]	aerobic	no	96.255	yes
[Ref.: #69480]	motile	yes	90.629	yes
[Ref.: #69480]	glucose-ferment	no	80.951	no

Availability in culture collections External links

[Ref.: #8132]

Culture collection no.

DSM 19735, LMG 23995

[Ref.: #75596]

SI-ID 354309

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isolation and characterization of Helicobacter suis sp. nov. from pig stomachs.	Baele M, Decostere A, Vandamme P, Ceelen L, Hellemans A, Mast J, Chiers K, Ducatelle R, Haesebrouck F	Int J Syst Evol Microbiol	10.1099/ijs.0.65133-0	2008	*

References

#8132

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19735

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32209

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28451 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75596

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID354309.1 )

#28451

IJSEM 1350 2008 ( DOI 10.1099/ijs.0.65133-0 , PubMed 18523177 )

* These data were automatically processed and therefore are not curated

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