Strain identifier

BacDive ID: 6109

Type strain: Yes

Species: Helicobacter suis

Strain Designation: HS1

Strain history: <- M. Baele; HS1 {2007}

NCBI tax ID(s): 104628 (species)

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General

@ref: 8132

BacDive-ID: 6109

DSM-Number: 19735

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, motile, spiral-shaped

description: Helicobacter suis HS1 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from pig, gastric mucosa.

NCBI tax id

  • NCBI tax id: 104628
  • Matching level: species

strain history

  • @ref: 8132
  • history: <- M. Baele; HS1 {2007}

doi: 10.13145/bacdive6109.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Helicobacteraceae
  • genus: Helicobacter
  • species: Helicobacter suis
  • full scientific name: Helicobacter suis Baele et al. 2008

  • synonyms

    • @ref: 20215
    • synonym: Helicobacter suis

@ref: 8132

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Helicobacteraceae

genus: Helicobacter

species: Helicobacter suis

full scientific name: Helicobacter suis Baele et al. 2008

strain designation: HS1

type strain: yes

Morphology

cell morphology

  • @ref: 32209
  • gram stain: negative
  • cell length: 4.5 µm
  • cell width: 1.05 µm
  • cell shape: spiral-shaped
  • motility: yes

colony morphology

  • @ref: 8132
  • incubation period: 3-7 days

Culture and growth conditions

culture medium

  • @ref: 8132
  • name: HELICOBACTER MEDIUM (DSMZ Medium 1279)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1279
  • composition: Name: HELICOBACTER MEDIUM (DSMZ Medium 1279) Composition: Brucella Broth 35.0 g/l Skirrow supplement Vitox Fetal bovine serum Demineralized water Amphotericin

culture temp

@refgrowthtypetemperaturerange
8132positivegrowth37mesophilic
32209positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
8132anaerobe
32209microaerophile

spore formation

  • @ref: 32209
  • spore formation: no

enzymes

@refvalueactivityec
32209alkaline phosphatase+3.1.3.1
32209catalase+1.11.1.6
32209cytochrome oxidase+1.9.3.1
32209urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 8132
  • sample type: pig, gastric mucosa
  • country: Belgium
  • origin.country: BEL
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Suidae (Pig,Swine)
#Host Body-Site#Gastrointestinal tract

taxonmaps

  • @ref: 69479
  • File name: preview.99_2690.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_36;96_1434;97_1711;98_2087;99_2690&stattab=map
  • Last taxonomy: Helicobacter suis subclade
  • 16S sequence: EF204589
  • Sequence Identity:
  • Total samples: 4074
  • soil counts: 79
  • aquatic counts: 63
  • animal counts: 3892
  • plant counts: 40

Safety information

risk assessment

  • @ref: 8132
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8132
  • description: Helicobacter suis HS1 16S ribosomal RNA gene, partial sequence
  • accession: EF204589
  • length: 1451
  • database: ena
  • NCBI tax ID: 710393

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Helicobacter suis DSM 19735GCA_017979375contigncbi104628
66792Helicobacter suis HS1GCA_000187625contigncbi710393
66792Helicobacter suis HS1710393.3wgspatric710393
66792Helicobacter suis strain DSM 19735104628.53wgspatric104628
66792Helicobacter suis HS1649989954draftimg710393

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno99.193yes
anaerobicno87.884no
halophileno86.245no
spore-formingno96.793yes
glucose-utilno77.026no
thermophileyes64.546yes
flagellatedno53.887no
aerobicno96.255yes
motileyes90.629yes
glucose-fermentno80.951no

External links

@ref: 8132

culture collection no.: DSM 19735, LMG 23995

straininfo link

  • @ref: 75596
  • straininfo: 354309

literature

  • topic: Phylogeny
  • Pubmed-ID: 18523177
  • title: Isolation and characterization of Helicobacter suis sp. nov. from pig stomachs.
  • authors: Baele M, Decostere A, Vandamme P, Ceelen L, Hellemans A, Mast J, Chiers K, Ducatelle R, Haesebrouck F
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65133-0
  • year: 2008
  • mesh: Animals, Bacterial Proteins/chemistry/genetics, Bacterial Typing Techniques, Bacteriological Techniques, Chaperonin 60/genetics, Culture Media, DNA, Bacterial/analysis, Electrophoresis, Polyacrylamide Gel, Female, Gastric Mucosa/*microbiology, Gastritis/microbiology/veterinary, Helicobacter/classification/genetics/*isolation & purification/physiology, Helicobacter Infections/microbiology/*veterinary, Humans, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Sequence Analysis, DNA, Species Specificity, Swine/*microbiology, Swine Diseases/*microbiology, Urease/genetics
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
8132Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19735)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19735
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32209Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2845128776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75596Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID354309.1StrainInfo: A central database for resolving microbial strain identifiers