Name: Helicobacter mastomyrinus DSM 22886
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6108

Type strain:

Species: Helicobacter mastomyrinus

Culture col. no.: DSM 22886, ATCC BAA-1046, CCUG 52417, MIT 97-5574

Strain history: <- CCUG <- Z. Shen, Massachusetts Inst. Technology, Cambridge, USA <- S. Xu

NCBI tax ID(s): 287948 (species)

SI-ID 297225

ATCC BAA-1046, CCUG 52417, DSM 22886

Special Collections

DSMZ
CCUG

Section

When using BacDive for research please cite our paper

Helicobacter mastomyrinus DSM 22886 is an anaerobe, mesophilic bacterium that was isolated from liver or cecum of the African rodent Mastomys natalensis.

anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Helicobacteraceae*
	Genus	*Helicobacter*
	Species	**Helicobacter mastomyrinus**
	Full Scientific Name (LPSN)	Helicobacter mastomyrinus Shen et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #16601]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16601]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #16601]

Culture medium growth

[Ref.: #16601]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16601]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16601]			growth	37 °C
[Ref.: #59541]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16601]	Oxygen tolerance	anaerobe
[Ref.: #59541]	Oxygen tolerance	microaerophile

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68373]	acetate ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	citrate ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	malate ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	propionate ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	succinate ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	triphenyltetrazolium chloride ChEBI	-	reduction	* from API CAM
[Ref.: #68373]	urea ChEBI	+	hydrolysis	* from API CAM

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #68373]	cefazolin ChEBI	yes	224	µg	* from API CAM
[Ref.: #68373]	erythromycin ChEBI	yes	14	µg	* from API CAM
[Ref.: #68373]	nalidixic acid ChEBI	yes	84	µg	* from API CAM

	Metabolite production	Metabolite	Production
[Ref.: #68373]		hydrogen sulfide ChEBI	no	* from API CAM

	Enzyme	Enzyme activity	EC number
[Ref.: #16601]	catalase	+	1.11.1.6
[Ref.: #68373]	catalase	+	1.11.1.6	* from API CAM
[Ref.: #16601]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68373]	esterase	-		* from API CAM
[Ref.: #68373]	gamma-glutamyltransferase	-	2.3.2.2	* from API CAM
[Ref.: #68373]	L-arginine arylamidase	-		* from API CAM
[Ref.: #68373]	L-aspartate arylamidase	-	3.4.11.21	* from API CAM
[Ref.: #68373]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API CAM
[Ref.: #68373]	urease	+	3.5.1.5	* from API CAM

API® CAM:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Reduction of nitrateNIT	EsteraseEST	Hippuric acidHIP	gamma-Glutamyl transferaseGGT	Reduction of Triphenyl tetrazolium chlorideTTC	Pyrrolidonyl arylamidasePYRA	L-arginine arylamidaseArgA	L-aspartic acid arylamidaseAspA	Alkaline phosphatasePAL	H2S productionH2S	Assimilation of D-glucoseGLU	Assimilation of succinateSUT	Growth inhibitionNAL	Growth inhibitionCFZ	Assimilation of acetateACE	Assimilation of propionic acidPROP	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Erythromycin resistance (+) sensitivity (-)ERO	CatalaseCAT
[Ref.: #16601]	4247	+	+	-	+	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	+
[Ref.: #16601]	4127	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.
[Ref.: #16601]	4126	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+
[Ref.: #16601]	4319	+	+	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16601]	Sample type/isolated from	liver or cecum of the African rodent Mastomys natalensis
[Ref.: #16601]	Host species	Mastomys natalensis

[Ref.: #59541]	Sample type/isolated from	Mastomys liver or cecum (Mastomys natalensis)
[Ref.: #59541]	Sampling date	1997-03-13
[Ref.: #59541]	Geographic location (country and/or sea, region)	MA,Cambridge
[Ref.: #59541]	Country	USA
[Ref.: #59541]	Country ISO 3 Code	USA
[Ref.: #59541]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body-Site	#Gastrointestinal tract	#Large intestine
#Host Body-Site	#Organ	#Liver

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY742307 (>99% sequence identity) for Helicobacter mastomyrinus subclade from Microbeatlas

Aquatic Samples
Soil Samples	3
Animal Samples	844
Plant Samples	1
Total Samples	848

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16601]	Pathogenicity (animal)	yes, in single cases
[Ref.: #16601]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16601]	Helicobacter mastomyrinus 16S ribosomal RNA gene, partial sequence	AY742307	1760	GenBank ENA	287948 tax ID

Availability in culture collections External links

[Ref.: #16601]

Culture collection no.

DSM 22886, ATCC BAA-1046, CCUG 52417, MIT 97-5574

[Ref.: #75595]

SI-ID 297225

References

#16601

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22886

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#59541 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52417

#68373

Automatically annotated from API CAM .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75595

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297225.1 )

* These data were automatically processed and therefore are not curated

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