Name: Halomonas andesensis LC6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6056

Type strain:

Species: Halomonas andesensis

Strain Designation: LC6

Culture col. no.: DSM 19434, CCUG 54844, LMG 24243

Strain history: <- D. Guzmán, Dept. Biotechnol., Lund Univ., Sweden; LC6 <- J. Quillaguamán

NCBI tax ID(s): 447567 (species)

SI-ID 407050

DSM 19434, CCUG 54844

Section

Halomonas andesensis LC6 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from saline lake water.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas andesensis**
	Full Scientific Name (LPSN)	Halomonas andesensis Guzmán et al. 2010

Synonym

"Vreelandella andesensis"

Information on morphological and physiological properties Morphology

[Ref.: #29505]	Gram stain	negative

[Ref.: #29505]	Cell length	3 µm

[Ref.: #29505]	Cell width	1.3 µm

[Ref.: #29505]	Cell shape	rod-shaped

[Ref.: #29505]	Motility	yes

[Ref.: #29505]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8013]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #8013]

Culture medium growth

[Ref.: #8013]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8013]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8013]	growth	28 °C
[Ref.: #29505]	growth	04-45 °C
[Ref.: #29505]	optimum	32.5 °C
[Ref.: #60351]	growth	30-37 °C

[Ref.: #8013]	Temperature range	mesophilic
[Ref.: #29505]	Temperature range	mesophilic
[Ref.: #60351]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29505]			optimum	7.5
[Ref.: #29505]			growth	06-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29505]	Oxygen tolerance	aerobe
[Ref.: #60351]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29505]		NaCl		growth	0.5-20	%
[Ref.: #29505]		NaCl		optimum	2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29505]	arabinose ChEBI	+	carbon source
[Ref.: #29505]	cellobiose ChEBI	+	carbon source
[Ref.: #29505]	fructose ChEBI	+	carbon source
[Ref.: #29505]	galactose ChEBI	+	carbon source
[Ref.: #29505]	gluconate ChEBI	+	carbon source
[Ref.: #29505]	glucose ChEBI	+	carbon source
[Ref.: #29505]	lactate ChEBI	+	carbon source
[Ref.: #29505]	maltose ChEBI	+	carbon source
[Ref.: #29505]	myo-inositol ChEBI	+	carbon source
[Ref.: #29505]	nitrate ChEBI	+	reduction
[Ref.: #29505]	propionate ChEBI	+	carbon source
[Ref.: #29505]	raffinose ChEBI	+	carbon source
[Ref.: #29505]	rhamnose ChEBI	+	carbon source
[Ref.: #29505]	sucrose ChEBI	+	carbon source
[Ref.: #29505]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29505]	catalase	+	1.11.1.6
[Ref.: #29505]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29505]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8013]	Sample type/isolated from	saline lake water
[Ref.: #8013]	Geographic location (country and/or sea, region)	Andes, lake Laguna Colorada (22° 12' S 67° 49' W), 4300m above sea level
[Ref.: #8013]	Country	Bolivia
[Ref.: #8013]	Country ISO 3 Code	BOL
[Ref.: #8013]	Continent	Middle and South America
[Ref.: #8013]	Geographic location	-22.2000°/-67.8167°

[Ref.: #60351]	Sample type/isolated from	Water of a lake
[Ref.: #60351]	Sampling date	2005-03-01
[Ref.: #60351]	Geographic location (country and/or sea, region)	Potosí,Laguna Colorada
[Ref.: #60351]	Country	Bolivia
[Ref.: #60351]	Country ISO 3 Code	BOL
[Ref.: #60351]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Condition	#Saline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8013]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8013]	Halomonas andesensis strain LC6 16S ribosomal RNA gene, partial sequence	EF622233	1408	ENA	447567 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halomonas andesensis DSM 19434	GCA_003989795	scaffold	GenBank	447567 tax ID	*
[Ref.: #66792]	Halomonas sp. DSM 19434	2498861.3	wgs	PATRIC	447567 tax ID	*
[Ref.: #66792]	Halomonas andesensis DSM 19434	2900696506	draft	JGI IMG/M	447567 tax ID	*

[Ref.: #8013]	GC-content	52.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29505]	GC-content	52.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomonas andesensis DSM 19434 NCBI: GCA_003989795.1
[Ref.: #69480]	motile	yes	91.239	yes
[Ref.: #69480]	flagellated	yes	65.988	no
[Ref.: #69480]	gram-positive	no	98.73	yes
[Ref.: #69480]	anaerobic	no	97.848	yes
[Ref.: #69480]	aerobic	yes	89.89	no
[Ref.: #69480]	halophile	yes	93.703	no
[Ref.: #69480]	spore-forming	no	95.884	no
[Ref.: #69480]	thermophile	no	99.11	yes
[Ref.: #69480]	glucose-util	yes	89.429	yes
[Ref.: #69480]	glucose-ferment	no	83.063	no

Availability in culture collections External links

[Ref.: #8013]

Culture collection no.

DSM 19434, CCUG 54844, LMG 24243

[Ref.: #75543]

SI-ID 407050

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas andesensis sp. nov., a moderate halophile isolated from the saline lake Laguna Colorada in Bolivia.	Guzman D, Quillaguaman J, Munoz M, Hatti-Kaul R	Int J Syst Evol Microbiol	10.1099/ijs.0.014522-0	2009	*

References

#8013

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19434

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29505

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25904 (see below)

#60351 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54844

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75543

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407050.1 )

#25904

IJSEM 749 2010 ( DOI 10.1099/ijs.0.014522-0 , PubMed 19656933 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Halomonas andesensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Halomonas andesensis DSM 19434

Change proposal

Change proposal