Halomonas saccharevitans (DSM 23548, CGMCC 1.6493, JCM 14606)

Name: Halomonas saccharevitans (DSM 23548, CGMCC 1.6493, JCM 14606)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6057

Type strain

Culture col. no. DSM 23548 CGMCC 1.6493 JCM 14606 LMG 23976 AJ 275 1 more

NCBI tax ID(s) 416872

Special Collections DSMZ JCM CIP Literature strains

History <- JCM; JCM 14606 <- X.-W. Xu X.-W. Xu AJ275. CIP <- 2007, JCM <- X.W. Xu, Zhejiang Univ., Hangzhou, China: strain AJ275

Links

Halomonas saccharevitans DSM 23548 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from water sample.

Gram-negative motile coccus-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 293475

LMG 23976,CGMCC 1.6493,JCM 14606,CIP 109670,DSM 23548

@ref 20215

Last LPSN update 2026-02-09 11:19:07

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Halomonadaceae

Genus Halomonas

Species Halomonas saccharevitans

Full scientific name Halomonas saccharevitans Xu et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
32135	negative	3 µm	1 µm	coccus-shaped
122328	negative			rod-shaped
125438	negative				99.5
125439	negative				90

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
17279	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
37811	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
122328	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
17279	positive	growth	28	mesophilic
32135	positive	growth	4.0-48
32135	positive	optimum	30	mesophilic
37811	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
32135	positive	optimum	7.5
32135	positive	growth	6.0-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
32135	aerobe
122328	facultative anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		98.7

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32135	NaCl	positive	growth	0.5-15 %
32135	NaCl	positive	optimum	5.25 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32135	16449 ChEBI	alanine	+	carbon source
32135	35391 ChEBI	aspartate	+	carbon source
32135	29987 ChEBI	glutamate	+	carbon source
32135	17754 ChEBI	glycerol	+	carbon source
122328	17632 ChEBI	nitrate	+	reduction
122328	16301 ChEBI	nitrite	-	reduction
32135	17822 ChEBI	serine	+	carbon source
32135	53424 ChEBI	tween 20	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122328	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
32135	catalase	+	1.11.1.6
122328	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
32135	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122328	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
122328	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122328	-	+	+	-	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Aquatic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
17279	water sample	Qinghai-Tibet Plateau, salt lake	China	CHN	Asia
67770	Water from a salt lake on the Qinghai-Tibet Plateau		China	CHN	Asia
122328	Environment, Hypersaline environments		China	CHN	Asia	2007

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17279	1	Risk group (German classification) According to TRBA 466
122328	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2617270933 annotated assembly for Halomonas saccharevitans CGMCC 1.6493	scaffold	GCA_900116405	416872.17	2617270933	416872	60.79

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17279	Halomonas saccharevitans strain AJ275 16S ribosomal RNA gene, partial sequence	EF144149	1407		416872

GC content

@ref	GC-content (mol%)	Method
17279	65.9±0.3	thermal denaturation, midpoint method (Tm)
32135	65.9
67770	65.6-66.2	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Halomonas saccharevitans CGMCC 1.6493
NCBI: GCA_900116405

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.70	no
125439	motility	BacteriaNetⓘ	yes	88.00	no
125439	gram_stain	BacteriaNetⓘ	negative	90.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	82.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Halomonas saccharevitans strain CGMCC 1.6493
PATRIC: 416872.17

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	yes
125438	anaerobic	anaerobicⓘ	no	95.83	no
125438	spore-forming	spore-formingⓘ	no	87.57	no
125438	aerobic	aerobicⓘ	yes	80.89	no
125438	thermophilic	thermophileⓘ	no	98.59	yes
125438	flagellated	motile2+ⓘ	yes	83.04	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Biodegradation of Para Amino Acetanilide by Halomonas sp. TBZ3.	Hajizadeh N, Sefidi Heris Y, Zununi Vahed S, Vallipour J, Hejazi MA, Golabi SM, Asadpour-Zeynali K, Hejazi MS	Jundishapur J Microbiol	10.5812/jjm.18622	2015
Phylogeny	Halomonas urmiana sp. nov., a moderately halophilic bacterium isolated from Urmia Lake in Iran.	Khan SA, Zununi Vahed S, Forouhandeh H, Tarhriz V, Chaparzadeh N, Hejazi MA, Jeon CO, Hejazi MS	Int J Syst Evol Microbiol	10.1099/ijsem.0.004005	2020
Phylogeny	Halomonas aestuarii sp. nov., a moderately halophilic bacterium isolated from a tidal flat.	Koh HW, Rani S, Kim SJ, Moon E, Nam SW, Rhee SK, Park SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001824	2017
Phylogeny	Halomonas stenophila sp. nov., a halophilic bacterium that produces sulphate exopolysaccharides with biological activity.	Llamas I, Bejar V, Martinez-Checa F, Martinez-Canovas MJ, Molina I, Quesada E	Int J Syst Evol Microbiol	10.1099/ijs.0.026369-0	2010
Phylogeny	Halomonas saccharevitans sp. nov., Halomonas arcis sp. nov. and Halomonas subterranea sp. nov., halophilic bacteria isolated from hypersaline environments of China.	Xu XW, Wu YH, Zhou Z, Wang CS, Zhou YG, Zhang HB, Wang Y, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.65022-0	2007

References

#17279	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23548
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28379	IJSEM 1619 2007 ( DOI 10.1099/ijs.0.65022-0 , PubMed 17625205 )
#32135	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28379
#37811	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#122328	Collection of Institut Pasteur ; Curators of the CIP; CIP 109670
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halomonas saccharevitans (DSM 23548, CGMCC 1.6493, JCM 14606)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900116405

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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