Name: Halomonas saccharevitans DSM 23548
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6057

Type strain:

Species: Halomonas saccharevitans

Culture col. no.: DSM 23548, CGMCC 1.6493, JCM 14606, LMG 23976, AJ 275, CIP 109670

Strain history: CIP <- 2007, JCM <- X.W. Xu, Zhejiang Univ., Hangzhou, China: strain AJ275

NCBI tax ID(s): 416872 (species)

SI-ID 293475

LMG 23976, CGMCC 1.6493, JCM 14606, CIP 109670, DSM 23548

Section

Halomonas saccharevitans DSM 23548 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from water sample.

coccus-shaped
Gram-negative
motile
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas saccharevitans**
	Full Scientific Name (LPSN)	Halomonas saccharevitans Xu et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32135]	Gram stain	negative
[Ref.: #122328]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #32135]	Cell length	3 µm

[Ref.: #32135]	Cell width	1 µm

[Ref.: #32135]	Cell shape	coccus-shaped
[Ref.: #122328]	Cell shape	rod-shaped

[Ref.: #32135]	Motility	yes
[Ref.: #122328]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.398

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17279]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #17279]

Culture medium growth

[Ref.: #17279]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17279]

Culture medium composition

expand / minimize

[Ref.: #37811]

Culture medium

Marine agar (MA)

[Ref.: #37811]

Culture medium growth

[Ref.: #37811]

Culture medium composition

expand / minimize

[Ref.: #122328]

Culture medium

CIP Medium 13

[Ref.: #122328]

Culture medium growth

[Ref.: #122328]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #17279]	growth	28 °C
[Ref.: #32135]	growth	4.0-48 °C
[Ref.: #32135]	optimum	30 °C
[Ref.: #37811]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #17279]	Temperature range	mesophilic
[Ref.: #32135]	Temperature range	mesophilic
[Ref.: #37811]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32135]			optimum	7.5
[Ref.: #32135]			growth	6.0-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32135]	Oxygen tolerance	aerobe
[Ref.: #122328]	Oxygen tolerance	facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.962

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32135]		NaCl		growth	0.5-15	%
[Ref.: #32135]		NaCl		optimum	5.25	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32135]	alanine ChEBI	+	carbon source
[Ref.: #32135]	aspartate ChEBI	+	carbon source
[Ref.: #32135]	glutamate ChEBI	+	carbon source
[Ref.: #32135]	glycerol ChEBI	+	carbon source
[Ref.: #122328]	nitrate ChEBI	+	reduction
[Ref.: #122328]	nitrite ChEBI	-	reduction
[Ref.: #32135]	serine ChEBI	+	carbon source
[Ref.: #32135]	tween 20 ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #122328]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32135]	catalase	+	1.11.1.6
[Ref.: #122328]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #32135]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122328]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122328]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122328]	12038	-	+	+	-	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17279]	Sample type/isolated from	water sample
[Ref.: #17279]	Geographic location (country and/or sea, region)	Qinghai-Tibet Plateau, salt lake
[Ref.: #17279]	Country	China
[Ref.: #17279]	Country ISO 3 Code	CHN
[Ref.: #17279]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Water from a salt lake on the Qinghai-Tibet Plateau
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #122328]	Sample type/isolated from	Environment, Hypersaline environments
[Ref.: #122328]	Country	China
[Ref.: #122328]	Country ISO 3 Code	CHN
[Ref.: #122328]	Continent	Asia
[Ref.: #122328]	Isolation date	2007
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17279]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122328]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17279]	Halomonas saccharevitans strain AJ275 16S ribosomal RNA gene, partial sequence	EF144149	1407	ENA	416872 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halomonas saccharevitans CGMCC 1.6493	GCA_900116405	scaffold	GenBank	416872 tax ID
[Ref.: #66792]	Halomonas saccharevitans strain CGMCC 1.6493	416872.17	wgs	PATRIC	416872 tax ID	*
[Ref.: #66792]	Halomonas saccharevitans CGMCC 1.6493	2617270933	draft	JGI IMG/M	416872 tax ID	*

[Ref.: #17279]	GC-content	65.9±0.3 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #32135]	GC-content	65.9 mol%
[Ref.: #67770]	GC-content	65.6-66.2 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halomonas saccharevitans CGMCC 1.6493 NCBI: GCA_900116405.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomonas saccharevitans strain CGMCC 1.6493 PATRIC: 416872.17
[Ref.: #69480]	gram-positive	no	99.029	yes
[Ref.: #69480]	anaerobic	no	96.278	yes
[Ref.: #69480]	halophile	yes	94.647	no
[Ref.: #69480]	spore-forming	no	96.574	no
[Ref.: #69480]	glucose-util	yes	83.481	no
[Ref.: #69480]	aerobic	yes	83.95	yes
[Ref.: #69480]	flagellated	yes	77.233	no
[Ref.: #69480]	thermophile	no	99.166	no
[Ref.: #69480]	motile	yes	93.545	yes
[Ref.: #69480]	glucose-ferment	no	77.226	no

Availability in culture collections External links

[Ref.: #17279]

Culture collection no.

DSM 23548, CGMCC 1.6493, JCM 14606, LMG 23976, AJ 275, CIP 109670

[Ref.: #75544]

SI-ID 293475

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas urmiana sp. nov., a moderately halophilic bacterium isolated from Urmia Lake in Iran.	Khan SA, Zununi Vahed S, Forouhandeh H, Tarhriz V, Chaparzadeh N, Hejazi MA, Jeon CO, Hejazi MS	Int J Syst Evol Microbiol	10.1099/ijsem.0.004005	2020	*
Phylogeny	Halomonas aestuarii sp. nov., a moderately halophilic bacterium isolated from a tidal flat.	Koh HW, Rani S, Kim SJ, Moon E, Nam SW, Rhee SK, Park SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001824	2017	*
Metabolism	Biodegradation of Para Amino Acetanilide by Halomonas sp. TBZ3.	Hajizadeh N, Sefidi Heris Y, Zununi Vahed S, Vallipour J, Hejazi MA, Golabi SM, Asadpour-Zeynali K, Hejazi MS	Jundishapur J Microbiol	10.5812/jjm.18622	2015	*
Phylogeny	Halomonas stenophila sp. nov., a halophilic bacterium that produces sulphate exopolysaccharides with biological activity.	Llamas I, Bejar V, Martinez-Checa F, Martinez-Canovas MJ, Molina I, Quesada E	Int J Syst Evol Microbiol	10.1099/ijs.0.026369-0	2010	*
Phylogeny	Halomonas saccharevitans sp. nov., Halomonas arcis sp. nov. and Halomonas subterranea sp. nov., halophilic bacteria isolated from hypersaline environments of China.	Xu XW, Wu YH, Zhou Z, Wang CS, Zhou YG, Zhang HB, Wang Y, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.65022-0	2007	*

References

#17279

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23548

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32135

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28379 (see below)

#37811 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75544

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID293475.1 )

#122328 Collection of Institut Pasteur ; Curators of the CIP; CIP 109670

#28379

IJSEM 1619 2007 ( DOI 10.1099/ijs.0.65022-0 , PubMed 17625205 )

* These data were automatically processed and therefore are not curated

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Halomonas saccharevitans CGMCC 1.6493

Halomonas saccharevitans strain CGMCC 1.6493

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