Name: Halomonas shengliensis SL014B-85
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6055

Type strain:

Species: Halomonas shengliensis

Strain Designation: SL014B-85

Culture col. no.: DSM 23416, CGMCC 1.6444, LMG 23897

Strain history: <- LMG <- CGMCC <- X.-L. Wu, Tsinghua University, Beijing; SL014B-85 <- H. Cai

NCBI tax ID(s): 419597 (species)

SI-ID 293009

LMG 23897, CGMCC 1.6444, DSM 23416

Section

Halomonas shengliensis SL014B-85 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from crude-oil-contaminated saline soil.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas shengliensis**
	Full Scientific Name (LPSN)	Halomonas shengliensis Wang et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32106]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #32106]	Cell length	1.0-1.6 µm

[Ref.: #32106]	Cell width	0.6-0.8 µm

[Ref.: #32106]	Cell shape	rod-shaped

[Ref.: #32106]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %95.71

[Ref.: #32106]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16853]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #16853]

Culture medium growth

[Ref.: #16853]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16853]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16853]	growth	28 °C
[Ref.: #32106]	growth	10-42 °C
[Ref.: #32106]	optimum	30 °C

[Ref.: #16853]	Temperature range	mesophilic
[Ref.: #32106]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32106]			optimum	8.5
[Ref.: #32106]			growth	08-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32106]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.939

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32106]		NaCl		growth	0-15	%
[Ref.: #32106]		NaCl		optimum	05-15	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32106]	dextrin ChEBI	+	carbon source
[Ref.: #32106]	galactose ChEBI	+	carbon source
[Ref.: #32106]	gluconate ChEBI	+	carbon source
[Ref.: #32106]	glucose ChEBI	+	carbon source
[Ref.: #32106]	lactose ChEBI	+	carbon source
[Ref.: #32106]	malate ChEBI	+	carbon source
[Ref.: #32106]	malonate ChEBI	+	carbon source
[Ref.: #32106]	mannose ChEBI	+	carbon source
[Ref.: #32106]	nitrate ChEBI	+	reduction
[Ref.: #32106]	sorbitol ChEBI	+	carbon source
[Ref.: #32106]	succinate ChEBI	+	carbon source
[Ref.: #32106]	sucrose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32106]	catalase	+	1.11.1.6
[Ref.: #32106]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32106]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16853]	Sample type/isolated from	crude-oil-contaminated saline soil
[Ref.: #16853]	Geographic location (country and/or sea, region)	Shangdong Province, Dongying, Shengli oil field
[Ref.: #16853]	Country	China
[Ref.: #16853]	Country ISO 3 Code	CHN
[Ref.: #16853]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	#Oil (Fuel)
#Engineered	#Industrial	#Oil reservoir
#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF121853 (>99% sequence identity) for Halomonas shengliensis from Microbeatlas

Aquatic Samples	697
Soil Samples	137
Animal Samples	633
Plant Samples	52
Total Samples	1519

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16853]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16853]	Halomonas shengliensis strain SL014B-85 16S ribosomal RNA gene, partial sequence	EF121853	1460	ENA	419597 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halomonas shengliensis CGMCC 1.6444	GCA_900104135	scaffold	GenBank	419597 tax ID	*
[Ref.: #66792]	Halomonas shengliensis strain CGMCC 1.6444	419597.17	wgs	PATRIC	419597 tax ID	*
[Ref.: #66792]	Halomonas shengliensis CGMCC 1.6444	2617270760	draft	JGI IMG/M	419597 tax ID	*

[Ref.: #16853]

GC-content

66.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halomonas shengliensis CGMCC 1.6444 NCBI: GCA_900104135.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomonas shengliensis CGMCC 1.6444 NCBI: GCA_900104135.1
[Ref.: #69480]	motile	yes	92.015	yes
[Ref.: #69480]	flagellated	yes	75.072	no
[Ref.: #69480]	gram-positive	no	98.996	yes
[Ref.: #69480]	anaerobic	no	98.638	yes
[Ref.: #69480]	aerobic	yes	82.934	no
[Ref.: #69480]	halophile	yes	93.759	no
[Ref.: #69480]	spore-forming	no	97.246	no
[Ref.: #69480]	glucose-ferment	no	79.001	no
[Ref.: #69480]	thermophile	no	97.916	yes
[Ref.: #69480]	glucose-util	yes	84.955	no

Availability in culture collections External links

[Ref.: #16853]

Culture collection no.

DSM 23416, CGMCC 1.6444, LMG 23897

[Ref.: #75542]

SI-ID 293009

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas alkalicola sp. nov., isolated from a household product plant.	Tang X, Zhai L, Lin Y, Yao S, Wang L, Ge Y, Liu Y, Zhang X, Zhang T, Zhang L, Liu J, Cheng C	Int J Syst Evol Microbiol	10.1099/ijsem.0.001757	2017	*
Phylogeny	Halomonas sediminicola sp. nov., a moderately halophilic bacterium isolated from a solar saltern sediment.	Lee JC, Kim SJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001278	2016	*
Phylogeny	Halomonas xiaochaidanensis sp. nov., isolated from a salt lake sediment.	Liu W, Zhang G, Xian W, Yang J, Yang L, Xiao M, Jiang H, Li WJ	Arch Microbiol	10.1007/s00203-016-1235-3	2016	*
Phylogeny	Halomonas korlensis sp. nov., a moderately halophilic, denitrifying bacterium isolated from saline and alkaline soil.	Li HB, Zhang LP, Chen SF	Int J Syst Evol Microbiol	10.1099/ijs.0.65711-0	2008	*
Phylogeny	Halomonas shengliensis sp. nov., a moderately halophilic, denitrifying, crude-oil-utilizing bacterium.	Wang YN, Cai H, Chi CQ, Lu AH, Lin XG, Jiang ZF, Wu XL	Int J Syst Evol Microbiol	10.1099/ijs.0.64973-0	2007	*

References

#16853

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23416

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32106

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28351 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75542

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID293009.1 )

#28351

IJSEM 1222 2007 ( DOI 10.1099/ijs.0.64973-0 , PubMed 17551033 )

* These data were automatically processed and therefore are not curated

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Halomonas shengliensis CGMCC 1.6444

Halomonas shengliensis CGMCC 1.6444

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