Name: Halomonas utahensis 65
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6025

Type strain:

Species: Halomonas utahensis

Strain Designation: 65

Culture col. no.: DSM 3051, III 65, IAM 14440, JCM 21223, ATCC 49240, CIP 105504, NBRC 102410

Strain history: IAM 14440 <-- DSM 3051 <-- C. Fendrich, III.

NCBI tax ID(s): 86177 (species)

Section

Halomonas utahensis 65 is a mesophilic bacterium that was isolated from hypersaline surface water.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas utahensis**
	Full Scientific Name (PNU)	Halomonas utahensis Sorokin and Tindall 2006

Synonym

Pseudomonas halophila

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1286]

Culture medium

MEDIUM 514 PLUS ADDITIONAL SALT (DSMZ Medium 514b)

[Ref.: #1286]

Culture medium growth

[Ref.: #1286]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #1286]

Culture medium composition

expand / minimize

[Ref.: #1286]

Culture medium

HALOVIBRIO VARIABILIS MEDIUM (DSMZ Medium 598)

[Ref.: #1286]

Culture medium growth

[Ref.: #1286]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #1286]

Culture medium composition

expand / minimize

[Ref.: #40186]

Culture medium

MEDIUM 286 - for Halomonas variabilis

[Ref.: #40186]

Culture medium growth

[Ref.: #40186]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #1286]	growth	30 °C
[Ref.: #40186]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #1286]	Temperature range	mesophilic
[Ref.: #40186]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1286]	Sample type/isolated from	hypersaline surface water
[Ref.: #1286]	Geographic location (country and/or sea, region)	Utah, Great salt lake of the north Arm
[Ref.: #1286]	Country	USA
[Ref.: #1286]	Country ISO 3 Code	USA
[Ref.: #1286]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Surface water from the North Arm of Great Salt Lake
[Ref.: #67770]	Geographic location (country and/or sea, region)	UT
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Surface water
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ306893 (>99% sequence identity) for Halomonas from Microbeatlas

Aquatic Samples	3268
Soil Samples	321
Animal Samples	696
Plant Samples	83
Total Samples	4368

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1286]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Halovibrio variabilis (DSM 3051) 16S ribosomal RNA (16S rRNA) gene	M93357	1470	ENA	31910 tax ID	*
[Ref.: #20218]	Halomonas variabilis genes for 16S ribosomal RNA, internal transcribed spacer 1 and 23S ribosomal RNA, partial and complete sequence, clone: 873	AB367223	873	ENA	31910 tax ID	*
[Ref.: #20218]	Halomonas variabilis genes for 16S ribosomal RNA, internal transcribed spacer 1 and 23S ribosomal RNA, partial and complete sequence, clone: 1387	AB367224	1387	ENA	31910 tax ID	*
[Ref.: #20218]	Halomonas variabilis gene for 16S rRNA, partial sequence, strain: NBRC 102410	AB681766	1458	ENA	31910 tax ID	*
[Ref.: #1286]	Halomonas variabilis partial 16S rRNA gene, strain DSM 3051	AJ306893	1528	ENA	31910 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halovibrio variabilis NBRC 102410	GCA_007991175	contig	GenBank	31910 tax ID	*
[Ref.: #66792]	Halomonas utahensis DSM 3051	GCA_019903425	scaffold	GenBank	86177 tax ID	*
[Ref.: #66792]	Halomonas utahensis strain DSM 3051	86177.9	wgs	PATRIC	86177 tax ID	*
[Ref.: #66792]	Halovibrio variabilis strain NBRC 102410	31910.4	wgs	PATRIC	31910 tax ID	*
[Ref.: #66792]	Clostridiales bacterium W0P44.010	GCA_004557735	contig	PATRIC	1898207 tax ID	*
[Ref.: #66792]	Lachnospiraceae bacterium RGIG2471	GCA_017433365	contig	PATRIC	1898203 tax ID	*

[Ref.: #1286]	GC-content	58 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	61 mol%

Availability in culture collections External links

[Ref.: #1286]

Culture collection no.

DSM 3051, III 65, IAM 14440, JCM 21223, ATCC 49240, CIP 105504, NBRC 102410

[Ref.: #20218]

Associated Passport(s) in StrainInfo

113992, 346276

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Extremely halophilic denitrifying bacteria from hypersaline inland lakes, Halovibrio denitrificans sp. nov. and Halospina denitrificans gen. nov., sp. nov., and evidence that the genus name Halovibrio Fendrich 1989 with the type species Halovibrio variabilis should be associated with DSM 3050.	Sorokin DY, Tourova TP, Galinski EA, Belloch C, Tindall BJ	Int J Syst Evol Microbiol	10.1099/ijs.0.63964-0	2006	*
Phylogeny	The status of the genus name Halovibrio Fendrich 1989 and the identity of the strains Pseudomonas halophila DSM 3050 and Halomonas variabilis DSM 3051. Request for an opinion.	Sorokin DY, Tindall BJ	Int J Syst Evol Microbiol	10.1099/ijs.0.63965-0	2006	*
Phylogeny	The designated type strain of Pseudomonas halophila Fendrich 1989 is DSM 3051, the designated type strain of Halovibrio variabilis Fendrich 1989 is DSM 3050, the new name Halomonas utahensis (Fendrich 1989) Sorokin and Tindall 2006 is created for the species represented by DSM 3051 when treated as a member of the genus Halomonas, the combination Halomonas variabilis (Fendrich 1989) Dobson and Franzmann 1996 is rejected, and the combination Halovibrio denitrificans Sorokin et al. 2006 is validly published with an emendation of the description of the genus Halovibrio Fendrich 1989 emend. Sorokin et al. 2006. Opinion 93. Judicial Commission of the International Committee on Systematics of Prokaryotes.	Tindall BJ	Int J Syst Evol Microbiol	10.1099/ijs.0.069195-0	2014	*

References

#1286

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3051

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#40186 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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