Halomonas eurihalina (DSM 5720, ATCC 49336, F9-6)

Name: Halomonas eurihalina (DSM 5720, ATCC 49336, F9-6)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6026

Type strain

Strain Designation F9-6

Culture col. no. DSM 5720 ATCC 49336 F9-6 CIP 106091

NCBI tax ID(s) 42566

Special Collections DSMZ CIP

Links

Halomonas eurihalina F9-6 is an obligate aerobe, mesophilic, Gram-negative prokaryote that was isolated from saline soil.

Gram-negative rod-shaped obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 46876

ATCC 49336,CIP 106091,DSM 5720,CGMCC 1.2318

@ref 20215

Last LPSN update 2025-12-16 09:48:13

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Halomonadaceae

Genus Halomonas

Species Halomonas eurihalina

Full scientific name Halomonas eurihalina (Quesada et al. 1990) Mellado et al. 1995

Synonyms (1)

Volcaniella eurihalina

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
119138	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
2309	MH MEDIUM (DSMZ Medium 624)	Medium recipe at MediaDive	Name: MH MEDIUM (DSMZ Medium 624) Composition: NaCl 60.7 g/l MgCl2 x 6 H2O 15.0 g/l Yeast extract 10.0 g/l MgSO4 x 7 H2O 7.4 g/l Proteose peptone no. 3 5.0 g/l KCl 1.5 g/l Glucose 1.0 g/l CaCl2 0.27 g/l NaHCO3 0.045 g/l NaBr 0.019 g/l Distilled water
39468	MEDIUM 318 - for Halomonas eurihalina		Sodium hydrogen carbonate (0.045 g);Distilled water make up to (1000.000 ml);Sodium chloride (60.700 g);Potassium chloride (1.500 g);Magnesium chloride hexahydrate(15.000 g);Magnesium sulphate heptahydrate (7.400 g);Calcium chloride dihydrate (0.270 g);Ag
119138	CIP Medium 318	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
2309	positive	growth	30-35	mesophilic
39468	positive	growth	30	mesophilic
119138	positive	growth	5-37
119138	negative	growth	41
119138	negative	growth	45

Physiology and metabolism

Oxygen tolerance

119138

Oxygen toleranceobligate aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
119138	NaCl	positive	growth	2-10 %
119138	NaCl		growth	0 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
119138	16947 ChEBI	citrate	-	carbon source
119138	4853 ChEBI	esculin	-	hydrolysis
119138	606565 ChEBI	hippurate	-	hydrolysis
119138	15792 ChEBI	malonate	-	assimilation
119138	17632 ChEBI	nitrate	+	reduction
119138	17632 ChEBI	nitrate	-	respiration
119138	16301 ChEBI	nitrite	-	reduction

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
119138	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119138	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
119138	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
119138	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
119138	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119138	caseinase	-	3.4.21.50
119138	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
119138	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119138	gamma-glutamyltransferase	+	2.3.2.2
119138	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
119138	lipase	-
68382	lipase (C 14)	-		from API zym
119138	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119138	ornithine decarboxylase	-	4.1.1.17
119138	oxidase	-
119138	phenylalanine ammonia-lyase	-	4.3.1.24
119138	protease	-
68382	trypsin	-	3.4.21.4	from API zym
119138	tryptophan deaminase	-
119138	tween esterase	+
119138	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119138	-	+	+	+	-	+	+	-	-	-	-	+	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119138	not determinedn.d.	+	+	+	+	+	-	-	+	-	+	+	+	-	-	-	+	+	-	+	-	+	+	-	+	-	+	+	+	-	-	-	+	-	+	+	+	-	+	-	-	+	-	-	+	+	-	-	-	+	+	+	-	-	+	+	-	+	-	-	+	+	-	+	+	-	-	-	-	-	-	-	+	+	-	-	+	-	-	+	+	+	-	-	+	+	-	-	-	+	-	+	+	+	+	+	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
2309	saline soil	Alicante	Spain	ESP	Europe
119138	Environment, Saline soil	Alicante	Spain	ESP	Europe

Taxonmaps

69479

Global distribution of 16S sequence X87218 (>99% sequence identity) for Halomonas elongata from Microbeatlas

Aquatic Samples	234
Soil Samples	71
Animal Samples	125
Plant Samples	18
Total Samples	448

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
2309	1	Risk group (German classification) According to TRBA 466
119138	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
124043	ASM3145163v1 assembly for Halomonas eurihalina DSM 5720	contig	GCA_031451635	42566.17	42566	74.21

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
2309	Volcaniella eurihalina 16S ribosomal RNA (16S rRNA) gene	L42620	1490		42566
2309	H.eurihalina 16S rRNA gene	X87218	1473		42566

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Isolation of two strong poly (U) binding proteins from moderate halophile Halomonas eurihalina and their identification as cold shock proteins.	Garapati UK, Suryanarayana T.	PLoS One	10.1371/journal.pone.0034409	2012
	Biology of moderately halophilic aerobic bacteria.	Ventosa A, Nieto JJ, Oren A.	Microbiol Mol Biol Rev	10.1128/mmbr.62.2.504-544.1998	1998
Phylogeny	Structural elucidation of a novel phosphoglycolipid isolated from six species of Halomonas.	Giordano A, Vella FM, Romano I, Gambacorta A	J Lipid Res	10.1194/jlr.M700152-JLR200	2007
Phylogeny	Isolation and characterization of Halomonas sp. strain IMPC, a p-coumaric acid-metabolizing bacterium that decarboxylates other cinnamic acids under hypersaline conditions.	Abdelkafi S, Labat M, Casalot L, Chamkha M, Sayadi S	FEMS Microbiol Lett	10.1111/j.1574-6968.2005.00061.x	2006
Phylogeny	Phylogenetic inferences and taxonomic consequences of 16S ribosomal DNA sequence comparison of Chromohalobacter marismortui, Volcaniella eurihalina, and Deleya salina and reclassification of V. eurihalina as Halomonas eurihalina comb. nov.	Mellado E, Moore ER, Nieto JJ, Ventosa A	Int J Syst Bacteriol	10.1099/00207713-45-4-712	1995

References

#2309	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5720
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#39468	; Curators of the CIP;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119138	Collection of Institut Pasteur ; Curators of the CIP; CIP 106091
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halomonas eurihalina (DSM 5720, ATCC 49336, F9-6)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

API zym

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_031451635

16S sequences

Genome-based predictions

Literature

Literature

References

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