Name: Halomonas halophila F 5-7
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6016

Type strain:

Species: Halomonas halophila

Strain Designation: F 5-7

Culture col. no.: DSM 4770, CCM 3662, JCM 20791, ATCC 49969, CGMCC 1.2316, CIP 103512, IAM 13009, LMG 6456, NBRC 102604, NCIMB 12996

Strain history: IAM 13009 <-- CCM 3662 <-- E. Quesada F5-7.

NCBI tax ID(s): 29573 (species)

Other strains from Halomonas halophila

H. halophila JCM 32864
H. halophila JCM 32866

Section

Halomonas halophila F 5-7 is a mesophilic bacterium that was isolated from hypersaline soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas halophila**
	Full Scientific Name (LPSN)	Halomonas halophila (Quesada et al. 1984) Dobson and Franzmann 1996

Synonym

Deleya halophila

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.988

[Ref.: #69480]	Motility	yes Confidence in %98.15

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1816]

Culture medium

MEDIUM 514 PLUS ADDITIONAL SALT (DSMZ Medium 514b)

[Ref.: #1816]

Culture medium growth

[Ref.: #1816]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1816]

Culture medium composition

expand / minimize

[Ref.: #1816]

Culture medium

MARINOCOCCUS ALBUS - MEDIUM (DSMZ Medium 434)

[Ref.: #1816]

Culture medium growth

[Ref.: #1816]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1816]

Culture medium composition

expand / minimize

[Ref.: #38128]

Culture medium

Marine agar (MA)

[Ref.: #38128]

Culture medium growth

[Ref.: #38128]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #1816]	growth	28 °C
[Ref.: #1816]	growth	30 °C
[Ref.: #38128]	growth	25 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #1816]	Temperature range	mesophilic
[Ref.: #38128]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.976

[Ref.: #67770]

Observation

quinones: Q-9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1816]	Sample type/isolated from	hypersaline soil

[Ref.: #67770]	Sample type/isolated from	Hypersaline soil near Alicante in southeast Spain
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM941744 (>99% sequence identity) for Halomonas from Microbeatlas

Aquatic Samples	667
Soil Samples	73
Animal Samples	115
Plant Samples	14
Total Samples	869

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1816]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Halomonas halophila partial 16S rRNA gene, strain CCM 3662	AM941744	1461	ENA	29573 tax ID	*
[Ref.: #20218]	Halomonas halophila partial 16S rRNA gene, strain DSM 4770	FN257740	1475	ENA	29573 tax ID	*
[Ref.: #20218]	Deleya halophila (DSM 4770) 16S ribosomal RNA (16S rRNA) gene	M93353	1478	ENA	29573 tax ID	*
[Ref.: #20218]	Halomonas halophila genes for 16S ribosomal RNA, internal transcribed spacer 1 and 23S ribosomal RNA, partial and complete sequence, clone: 1182	AB367215	1182	ENA	29573 tax ID	*
[Ref.: #20218]	Halomonas halophila gene for 16S rRNA, partial sequence, strain: NBRC 102604	AB681879	1463	ENA	29573 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halomonas halophila NBRC 102604	GCA_007989465	contig	GenBank	29573 tax ID	*
[Ref.: #66792]	Halomonas halophila strain NBRC 102604	29573.3	wgs	PATRIC	29573 tax ID	*

[Ref.: #67770]

GC-content

66.7 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomonas halophila strain NBRC 102604 PATRIC: 29573.3
[Ref.: #69480]	anaerobic	no	99.208	no
[Ref.: #69480]	spore-forming	no	99.976	yes
[Ref.: #69480]	gram-positive	no	99.988	yes
[Ref.: #69480]	thermophile	no	99.414	yes
[Ref.: #69480]	motile	yes	98.15	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halomonas halophila strain NBRC 102604 PATRIC: 29573.3
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #1816]

Culture collection no.

DSM 4770, CCM 3662, JCM 20791, ATCC 49969, CGMCC 1.2316, CIP 103512, IAM 13009, LMG 6456, NBRC 102604, NCIMB 12996

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas smyrnensis sp. nov., a moderately halophilic, exopolysaccharide-producing bacterium.	Poli A, Nicolaus B, Denizci AA, Yavuzturk B, Kazan D	Int J Syst Evol Microbiol	10.1099/ijs.0.037036-0	2012	*
Phylogeny	Structural elucidation of a novel phosphoglycolipid isolated from six species of Halomonas.	Giordano A, Vella FM, Romano I, Gambacorta A	J Lipid Res	10.1194/jlr.M700152-JLR200	2007	*
Cultivation	Growth rate and some physiological features of Deleya halophila CCM 3662 at different salt concentrations.	Ferrer MR, del Moral A, Quesada E, Ramos-Cormenzana A	Ann Inst Pasteur Microbiol	10.1016/0769-2609(87)90053-6	1987	*

References

#1816

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4770

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38128 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Halomonas halophila strain NBRC 102604

Halomonas halophila strain NBRC 102604

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