[Ref.: #1748] |
Sample type/isolated from |
seawater |
|
[Ref.: #121498] |
Sample type/isolated from |
Environment, Seawater |
[Ref.: #121498] |
Geographic location (country and/or sea, region) |
Hawaii |
[Ref.: #121498] |
Country |
United States of America |
[Ref.: #121498] |
Country ISO 3 Code |
USA |
[Ref.: #121498] |
Continent |
North America |
* marker position based on {}
|
|
Isolation sources categories |
#Environmental |
#Aquatic |
#Marine |
|
|
-
Information on genomic background e.g. entries in nucleic sequence databass Sequence information
|
16S Sequence information: |
|
|
Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #20218] |
Halomonas pacifica 16S ribosomal RNA gene, partial sequence |
EU373088 |
1449 |
|
77098 tax ID |
* |
[Ref.: #20218] |
Deleya pacifica 16S ribosomal RNA (16S rRNA) gene |
L42616 |
1480 |
|
77098 tax ID |
* |
[Ref.: #20218] |
Halomonas pacifica genes for 16S ribosomal RNA, internal transcribed spacer 1 and 23S ribosomal RNA, partial and complete sequence, clone: 790 |
AB367218 |
790 |
|
77098 tax ID |
* |
[Ref.: #20218] |
Halomonas pacifica genes for 16S ribosomal RNA, internal transcribed spacer 1 and 23S ribosomal RNA, partial and complete sequence, clone: 1255 |
AB367219 |
1255 |
|
77098 tax ID |
* |
[Ref.: #20218] |
Halomonas pacifica gene for 16S rRNA, partial sequence, strain: NBRC 102220 |
AB681734 |
1463 |
|
77098 tax ID |
* |
|
|
Genome sequence information: |
|
|
Sequence accession description |
Seq. accession number |
Assembly level |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #66792] |
Halomonas pacifica NBRC 102220 |
GCA_007989625 |
contig |
|
77098 tax ID |
* |
[Ref.: #66792] |
Halomonas pacifica strain NBRC 102220 |
77098.3 |
wgs |
|
77098 tax ID |
* |
|
[Ref.: #67770] |
GC-content |
66 mol% |
thermal denaturation, midpoint method (Tm) |
|
-
Availability in culture collections External links
[Ref.: #1748] |
Culture collection no. |
DSM 4742, ATCC 27122, JCM 20633, ACAM 345, CIP 103200, CIP 74.05, IAM 12553, LMG 3446, NBRC 102220, NCIMB 1977, CCUG 16079 |
[Ref.: #75503] |
SI-ID 92226
|
* |
|
Literature: |
|
Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Pathogenicity |
Combinatorial materials research applied to the development of new surface coatings III. Utilisation of a high-throughput multiwell plate screening method to rapidly assess bacterial biofilm retention on antifouling surfaces. |
Stafslien S, Daniels J, Chisholm B, Christianson D |
Biofouling |
10.1080/08927010601127311 |
2007 |
* |
Phylogeny |
Halomonas salinarum sp. nov., a moderately halophilic bacterium isolated from saline soil in Yingkou, China. |
Yin YL, Li FL, Wang L |
Arch Microbiol |
10.1007/s00203-022-03032-3 |
2022 |
* |
|
- References
-
#1748 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 4742
|
-
-
-
#36493 |
; Curators of the CIP;
|
-
-
#66794 |
Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg:
BRENDA, the ELIXIR core data resource in 2021: new developments and updates.
Nucleic Acids Res. 49:
D498 - D508
2020 (
DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
|
-
#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
|
-
#68382 |
Automatically annotated from API zym .
|
-
#69479 |
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
|
-
-
-
#75503 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID92226.1 )
|
-
#121498 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 103200
|
- * These data were automatically processed and therefore are not curated
Change proposal
Successfully sent
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