Name: Halorubrum tebenquichense ALT-6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5945

Type strain:

Species: Halorubrum tebenquichense

Strain Designation: ALT-6, ALT6-92

Culture col. no.: DSM 14210, CECT 5317, JCM 12290, CGMCC 1.6289

Strain history: DSM 14210 <-- CECT 5317 <-- A. Ramos-Cormenzana ALT6-92 <-- C. Lizama.

NCBI tax ID(s): 1227485 (strain), 119434 (species)

SI-ID 100680

CECT 5317, KCTC 12951, JCM 12290, DSM 14210

Section

Halorubrum tebenquichense ALT-6 is a mesophilic, Gram-negative archaeon that was isolated from salt mine.

Gram-negative
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Haloferacales*
	Family	*Halorubraceae*
	Genus	*Halorubrum*
	Species	**Halorubrum tebenquichense**
	Full Scientific Name (LPSN)	Halorubrum tebenquichense Lizama et al. 2002

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.964

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5252]

Culture medium

HALOBACTERIA MEDIUM (DSMZ Medium 372)

[Ref.: #5252]

Culture medium growth

[Ref.: #5252]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5252]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5252]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #5252]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.998

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5252]	Sample type/isolated from	salt mine
[Ref.: #5252]	Geographic location (country and/or sea, region)	Atacama desert, Lake Tebenquiche
[Ref.: #5252]	Country	Chile
[Ref.: #5252]	Country ISO 3 Code	CHL
[Ref.: #5252]	Continent	Middle and South America

[Ref.: #67770]	Sample type/isolated from	Lake Tebenquiche
[Ref.: #67770]	Geographic location (country and/or sea, region)	situated in the northern part of the Atacama Saltern
[Ref.: #67770]	Country	Chile
[Ref.: #67770]	Country ISO 3 Code	CHL
[Ref.: #67770]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Engineered	#Other	#Mine
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR870448 (>99% sequence identity) for Halorubrum tebenquichense from Microbeatlas

Aquatic Samples	1
Soil Samples
Animal Samples
Plant Samples
Total Samples	1

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5252]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halorubrum tebenquichense 16S rRNA gene, type strain ALT6-92	AJ276887	1483	ENA	119434 tax ID
[Ref.: #20218]	Halorubrum tebenquichense partial 16S rRNA gene, type strain CECT 5317T	FR870448	1460	ENA	119434 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halorubrum tebenquichense DSM 14210	GCA_000337415	contig	GenBank	1227485 tax ID
[Ref.: #66792]	Halorubrum tebenquichense DSM 14210	1227485.3	wgs	PATRIC	1227485 tax ID	*

[Ref.: #5252]	GC-content	63.2 mol%
[Ref.: #67770]	GC-content	63.2 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halorubrum tebenquichense DSM 14210 DSM 14210 NCBI: GCA_000337415.1
[Ref.: #69481]	spore-forming	no	89	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halorubrum tebenquichense DSM 14210 PATRIC: 1227485.3
[Ref.: #69480]	motile	no	75.873	no
[Ref.: #69480]	gram-positive	no	97.662	no
[Ref.: #69480]	anaerobic	no	98.324	no
[Ref.: #69480]	aerobic	yes	90.531	no
[Ref.: #69480]	halophile	yes	90.338	no
[Ref.: #69480]	spore-forming	no	93.596	no
[Ref.: #69480]	thermophile	no	94.549	no
[Ref.: #69480]	glucose-util	yes	89.226	no
[Ref.: #69480]	flagellated	no	95.664	no
[Ref.: #69480]	glucose-ferment	no	80.453	no

Availability in culture collections External links

[Ref.: #5252]

Culture collection no.

DSM 14210, CECT 5317, JCM 12290, CGMCC 1.6289

[Ref.: #75434]

SI-ID 100680

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halorubrum tebenquichense sp. nov., a novel halophilic archaeon isolated from the Atacama Saltern, Chile.	Lizama C, Monteoliva-Sanchez M, Suarez-Garcia A, Rosello-Mora R, Aguilera M, Campos V, Ramos-Cormenzana A	Int J Syst Evol Microbiol	10.1099/00207713-52-1-149	2002	*

References

#5252

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14210

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75434

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100680.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Halorubrum tebenquichense in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Halorubrum tebenquichense DSM 14210 DSM 14210

Halorubrum tebenquichense DSM 14210

Change proposal

Change proposal