Halorubrum coriense (DSM 10284, ACM 3911, Ch2)

Name: Halorubrum coriense (DSM 10284, ACM 3911, Ch2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5944

Type strain

Strain Designation Ch2

Culture col. no. DSM 10284 ACM 3911 Ch2 JCM 9275 CGMCC 1.2929 2 more

NCBI tax ID(s) 1227466 64713

Special Collections DSMZ JCM CIP

Links

Halorubrum coriense Ch2 is a mesophilic, Gram-negative, rod-shaped prokaryote of the family Haloferacaceae.

Gram-negative rod-shaped mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 48792

CIP 105331,ACM 3911,JCM 9275,DSM 10284

@ref 20215

Last LPSN update 2025-12-16 09:48:11

Domain Methanobacteriati

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Haloferacaceae

Genus Halorubrum

Species Halorubrum coriense

Full scientific name Halorubrum coriense (Kamekura and Dyall-Smith 1996) Oren and Ventosa 1996

Synonyms (2)

Halorubrobacterium coriense
Halorubrobacterium coriensis

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
118752	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3880	HALOBACTERIA MEDIUM (DSMZ Medium 372)	Medium recipe at MediaDive	Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water
39266	MEDIUM 204 - for Halorubrum, Marinococcus and Natrialba		Distilled water make up to (1000.000 ml);Sodium chloride (200.000 g);Potassium chloride (2.000 g);ManganeseII chloride tetrahydrate (0.360 mg);Magnesium sulphate heptahydrate (20.000 g);Agar (20.000 g);Yeast extract (5.000 g);Ferrous chloride tetrahydrate
118752	CIP Medium 204	Medium recipe at CIP
118752	CIP Medium 240	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
3880	positive	growth	37	mesophilic
39266	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic
118752	positive	growth	30-45
118752	negative	growth	5
118752	negative	growth	15
118752	negative	growth	22
118752	negative	growth	25

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		95.5

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
118752	606565 ChEBI	hippurate	-	hydrolysis
118752	17632 ChEBI	nitrate	-	reduction
118752	16301 ChEBI	nitrite	-	reduction
118752	35020 ChEBI	tributyrin	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
118752	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
118752	15688 ChEBI	acetoin	-
118752	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
118752	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
118752	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
118752	gamma-glutamyltransferase	-	2.3.2.2
118752	gelatinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
118752	oxidase	-
118752	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
118752	tryptophan deaminase	-
118752	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118752	-	+	+	+	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
39266		Geelong	Australia	AUS	Australia and Oceania
67770	Marine solar saltern in Geelong		Australia	AUS	Australia and Oceania
118752	Marine solar saltern	Geelong	Australia	AUS	Australia and Oceania

Taxonmaps

69479

Global distribution of 16S sequence L00922 (>99% sequence identity) for Halorubrum from Microbeatlas

Aquatic Samples	1
Soil Samples
Animal Samples
Plant Samples
Total Samples	1

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3880	1	Risk group (German classification) According to TRBA 466
118752	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM33703v1 assembly for Halorubrum coriense DSM 10284	contig	GCA_000337035	1227466.3	2554235473	1227466	63.48

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Halorubrum coriense gene for 16S rRNA, complete sequence, strain: JCM 9275	AB663409	1470		64713
3880	Halorubrum coriense isolate Ch2 16S ribosomal RNA gene, complete sequence	L00922	1469		64713

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Halorubrum coriense DSM 10284
NCBI: GCA_000337035

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.50	no
125439	motility	BacteriaNetⓘ	yes	64.60	no
125439	gram_stain	BacteriaNetⓘ	negative	89.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	80.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genomic insights into Halorubrum ezzemoulense strain TC23: Genetic basis for halophilic traits and biotechnological potential.	Kesbic FI.	Sci Prog	10.1177/00368504251364316	2025
	The Novel Halovirus Hardycor1, and the Presence of Active (Induced) Proviruses in Four Haloarchaea.	Dyall-Smith M, Pfeiffer F, Chiang PW, Tang SL.	Genes (Basel)	10.3390/genes12020149	2021
Genetics	Evidence from phylogenetic and genome fingerprinting analyses suggests rapidly changing variation in Halorubrum and Haloarcula populations.	Ram Mohan N, Fullmer MS, Makkay AM, Wheeler R, Ventosa A, Naor A, Gogarten JP, Papke RT.	Front Microbiol	10.3389/fmicb.2014.00143	2014
Metabolism	Dihydroxyacetone metabolism in Haloferax volcanii.	Ouellette M, Makkay AM, Papke RT.	Front Microbiol	10.3389/fmicb.2013.00376	2013
	Identification of polyhydroxyalkanoates in Halococcus and other haloarchaeal species.	Legat A, Gruber C, Zangger K, Wanner G, Stan-Lotter H.	Appl Microbiol Biotechnol	10.1007/s00253-010-2611-6	2010
Transcriptome	Population and genomic analysis of the genus Halorubrum.	Fullmer MS, Soucy SM, Swithers KS, Makkay AM, Wheeler R, Ventosa A, Gogarten JP, Papke RT.	Front Microbiol	10.3389/fmicb.2014.00140	2014
Phylogeny	Halorubrum salinarum sp. nov., an extremely halophilic archaeon isolated from a saturated brine pond of a saltern.	Han HL, Danganan RE, Li Z, Shin NR, Bennett RM, Dedeles GR, Kim SG	Int J Syst Evol Microbiol	10.1099/ijsem.0.005231	2022

References

#3880	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10284
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#39266	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118752	Collection of Institut Pasteur ; Curators of the CIP; CIP 105331
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halorubrum coriense (DSM 10284, ACM 3911, Ch2)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000337035

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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