Name: Halobacterium noricense A1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5915

Type strain:

Species: Halobacterium noricense

Strain Designation: A1

Culture col. no.: DSM 15987, ATCC BAA-852, NCIMB 13967, JCM 15102

Strain history: NCIMB 13967 <-- H. Stan-Lotter A1.

NCBI tax ID(s): 223182 (species)

SI-ID 138985

ATCC BAA-852, DSM 15987, NCIMB 13967, JCM 15102

Special Collections

DSMZ
JCM

Other strains from Halobacterium noricense

Section

Halobacterium noricense A1 is a Gram-negative archaeon that was isolated from bore core of an alpine Permian salt deposit.

Gram-negative
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Halobacteriaceae*
	Genus	*Halobacterium*
	Species	**Halobacterium noricense**
	Full Scientific Name (LPSN)	Halobacterium noricense Gruber et al. 2005

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6223]

Culture medium

HALOBACTERIA MEDIUM (DSMZ Medium 372)

[Ref.: #6223]

Culture medium growth

[Ref.: #6223]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6223]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6223]			growth	37 °C
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8, MK-8(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6223]	Sample type/isolated from	bore core of an alpine Permian salt deposit
[Ref.: #6223]	Geographic location (country and/or sea, region)	Altausee
[Ref.: #6223]	Country	Austria
[Ref.: #6223]	Country ISO 3 Code	AUT
[Ref.: #6223]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Bore core sample of Permian rock salt from the salt mine in Altaussee
[Ref.: #67770]	Country	Austria
[Ref.: #67770]	Country ISO 3 Code	AUT
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Geologic
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ548827 (>99% sequence identity) for Halobacterium from Microbeatlas

Aquatic Samples	126
Soil Samples	18
Animal Samples	9
Plant Samples	2
Total Samples	155

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6223]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6223]	Halobacterium sp. A1 partial 16S rRNA gene	AJ548827	1473	GenBank ENA	223182 tax ID
[Ref.: #124043]	Halobacterium noricense gene for 16S rRNA, complete sequence, strain: JCM 15102.	AB663360	1473	GenBank ENA	223182 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halobacterium noricense JCM 15102	GCA_021233435	complete	GenBank ENA	223182 tax ID	*

[Ref.: #67770]

GC-content

54.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halobacterium noricense JCM 15102 NCBI: GCA_021233435.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	76.275	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	80.649	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	76.774	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.548	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	80.117	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87	no

Availability in culture collections External links

[Ref.: #6223]

Culture collection no.

DSM 15987, ATCC BAA-852, NCIMB 13967, JCM 15102

[Ref.: #75396]

SI-ID 138985

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Association of Eu(III) and Cm(III) onto an extremely halophilic archaeon.	Bader M, Moll H, Steudtner R, Losch H, Drobot B, Stumpf T, Cherkouk A	Environ Sci Pollut Res Int	10.1007/s11356-019-04165-7	2019	*
Phylogeny	Comparative analysis of uranium bioassociation with halophilic bacteria and archaea.	Bader M, Muller K, Foerstendorf H, Schmidt M, Simmons K, Swanson JS, Reed DT, Stumpf T, Cherkouk A	PLoS One	10.1371/journal.pone.0190953	2018	*
Phylogeny	Halobacterium litoreum sp. nov., isolated from a marine solar saltern.	Lu ZZ, Li Y, Zhou Y, Cui HL, Li ZR	Int J Syst Evol Microbiol	10.1099/ijsem.0.002259	2017	*
Phylogeny	Halobacterium rubrum sp. nov., isolated from a marine solar saltern.	Han D, Cui HL	Arch Microbiol	10.1007/s00203-014-1023-x	2014	*
Phylogeny	Halobacterium piscisalsi Yachai et al. 2008 is a later heterotypic synonym of Halobacterium salinarum Elazari-Volcani 1957.	Minegishi H, Echigo A, Shimane Y, Kamekura M, Tanasupawat S, Visessanguan W, Usami R	Int J Syst Evol Microbiol	10.1099/ijs.0.036905-0	2011	*
Phylogeny	Halobacterium noricense sp. nov., an archaeal isolate from a bore core of an alpine Permian salt deposit, classification of Halobacterium sp. NRC-1 as a strain of H. salinarum and emended description of H. salinarum.	Gruber C, Legat A, Pfaffenhuemer M, Radax C, Weidler G, Busse HJ, Stan-Lotter H	Extremophiles	10.1007/s00792-004-0403-6	2004	*
	Impact of Haloarchaea on Speciation of Uranium-A Multispectroscopic Approach.	Bader M, Rossberg A, Steudtner R, Drobot B, Grossmann K, Schmidt M, Musat N, Stumpf T, Ikeda-Ohno A, Cherkouk A	Environ Sci Technol	10.1021/acs.est.8b02667	2018	*

References

#6223

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15987

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75396

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID138985.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Halobacterium noricense JCM 15102

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