Strain identifier
BacDive ID: 5915
Type strain:
Species: Halobacterium noricense
Strain Designation: A1
Strain history: NCIMB 13967 <-- H. Stan-Lotter A1.
NCBI tax ID(s): 223182 (species)
General
@ref: 6223
BacDive-ID: 5915
DSM-Number: 15987
keywords: genome sequence, 16S sequence, Archaea, mesophilic
description: Halobacterium noricense A1 is a mesophilic archaeon that was isolated from bore core of an alpine Permian salt deposit.
NCBI tax id
- NCBI tax id: 223182
- Matching level: species
strain history
@ref | history |
---|---|
6223 | <- H. Stan-Lotter, Univ. Salzburg, Inst. Genetics; A1 <- H. Stan-Lotter and C. Gruber |
67770 | NCIMB 13967 <-- H. Stan-Lotter A1. |
doi: 10.13145/bacdive5915.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Halobacteriales
- family: Halobacteriaceae
- genus: Halobacterium
- species: Halobacterium noricense
- full scientific name: Halobacterium noricense Gruber et al. 2005
@ref: 6223
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Halobacteriaceae
genus: Halobacterium
species: Halobacterium noricense
full scientific name: Halobacterium noricense Gruber et al. 2005
strain designation: A1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 6223
- name: HALOBACTERIA MEDIUM (DSMZ Medium 372)
- growth: yes
- link: https://mediadive.dsmz.de/medium/372
- composition: Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
6223 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-8, MK-8(H2)
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
6223 | bore core of an alpine Permian salt deposit | Altausee | Austria | AUT | Europe |
67770 | Bore core sample of Permian rock salt from the salt mine in Altaussee | Austria | AUT | Europe |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Geologic |
#Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_187136.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17654;96_68807;97_89449;98_121733;99_187136&stattab=map
- Last taxonomy: Halobacterium
- 16S sequence: AJ548827
- Sequence Identity:
- Total samples: 155
- soil counts: 18
- aquatic counts: 126
- animal counts: 9
- plant counts: 2
Safety information
risk assessment
- @ref: 6223
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6223
- description: Halobacterium sp. A1 partial 16S rRNA gene
- accession: AJ548827
- length: 1473
- database: ena
- NCBI tax ID: 223182
Genome sequences
- @ref: 66792
- description: Halobacterium noricense JCM 15102
- accession: GCA_021233435
- assembly level: complete
- database: ncbi
- NCBI tax ID: 223182
GC content
- @ref: 67770
- GC-content: 54.5
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 95.958 | no |
gram-positive | no | 97.227 | no |
anaerobic | no | 93.566 | no |
aerobic | yes | 78.794 | no |
halophile | yes | 88.494 | no |
spore-forming | no | 95.814 | no |
motile | no | 77.311 | no |
thermophile | no | 86.52 | yes |
glucose-util | yes | 87.513 | no |
glucose-ferment | no | 78.252 | no |
External links
@ref: 6223
culture collection no.: DSM 15987, ATCC BAA 852, NCIMB 13967, JCM 15102
straininfo link
- @ref: 75396
- straininfo: 138985
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 15290323 | Halobacterium noricense sp. nov., an archaeal isolate from a bore core of an alpine Permian salt deposit, classification of Halobacterium sp. NRC-1 as a strain of H. salinarum and emended description of H. salinarum. | Gruber C, Legat A, Pfaffenhuemer M, Radax C, Weidler G, Busse HJ, Stan-Lotter H | Extremophiles | 10.1007/s00792-004-0403-6 | 2004 | Archaeal Proteins/isolation & purification, Austria, Base Composition, Carotenoids/analysis, DNA, Archaeal/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, Archaeal, Geologic Sediments/*microbiology, Halobacterium/chemistry/classification/genetics/*isolation & purification, Halobacterium salinarum/*classification/genetics, Lipids/analysis/chemistry, Microscopy, Electron, Scanning, Phylogeny, Plasmids/genetics, RNA, Archaeal/genetics, RNA, Ribosomal, 16S/genetics, Sodium Chloride, Species Specificity, Terminology as Topic, Vitamin K 2/analysis | Enzymology |
Phylogeny | 22058320 | Halobacterium piscisalsi Yachai et al. 2008 is a later heterotypic synonym of Halobacterium salinarum Elazari-Volcani 1957. | Minegishi H, Echigo A, Shimane Y, Kamekura M, Tanasupawat S, Visessanguan W, Usami R | Int J Syst Evol Microbiol | 10.1099/ijs.0.036905-0 | 2011 | DNA, Archaeal/genetics, DNA-Directed RNA Polymerases/genetics, *Food Microbiology, Halobacterium/*classification/genetics/isolation & purification, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thailand | Biotechnology |
Phylogeny | 25112838 | Halobacterium rubrum sp. nov., isolated from a marine solar saltern. | Han D, Cui HL | Arch Microbiol | 10.1007/s00203-014-1023-x | 2014 | Base Composition, China, DNA, Archaeal/genetics, Glycolipids/analysis, Halobacterium/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Lipids/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, *Sodium Chloride | Enzymology |
Phylogeny | 28901903 | Halobacterium litoreum sp. nov., isolated from a marine solar saltern. | Lu ZZ, Li Y, Zhou Y, Cui HL, Li ZR | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002259 | 2017 | Base Composition, China, DNA, Archaeal/genetics, Genes, Archaeal, Glycolipids/analysis, Halobacterium/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Salinity, Sequence Analysis, DNA, *Water Microbiology | Transcriptome |
Phylogeny | 29329319 | Comparative analysis of uranium bioassociation with halophilic bacteria and archaea. | Bader M, Muller K, Foerstendorf H, Schmidt M, Simmons K, Swanson JS, Reed DT, Stumpf T, Cherkouk A | PLoS One | 10.1371/journal.pone.0190953 | 2018 | Bacteria/classification/growth & development/*metabolism, Halobacterium/classification/growth & development/*metabolism, Microscopy, Electron, Scanning, Phylogeny, Radioactive Waste, Spectrometry, X-Ray Emission, Spectroscopy, Fourier Transform Infrared, Uranium/*metabolism | Metabolism |
30125086 | Impact of Haloarchaea on Speciation of Uranium-A Multispectroscopic Approach. | Bader M, Rossberg A, Steudtner R, Drobot B, Grossmann K, Schmidt M, Musat N, Stumpf T, Ikeda-Ohno A, Cherkouk A | Environ Sci Technol | 10.1021/acs.est.8b02667 | 2018 | Archaea, Biodegradation, Environmental, *Radioactive Waste, *Uranium, X-Ray Absorption Spectroscopy | ||
Metabolism | 30721439 | Association of Eu(III) and Cm(III) onto an extremely halophilic archaeon. | Bader M, Moll H, Steudtner R, Losch H, Drobot B, Stumpf T, Cherkouk A | Environ Sci Pollut Res Int | 10.1007/s11356-019-04165-7 | 2019 | Archaea/metabolism/*physiology, Curium/*metabolism, Europium/chemistry/*metabolism, Lasers, *Radioactive Waste, Salt Tolerance, Spectrometry, Fluorescence/methods |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
6223 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15987) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15987 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
75396 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID138985.1 | StrainInfo: A central database for resolving microbial strain identifiers |