Strain identifier

BacDive ID: 5915

Type strain: Yes

Species: Halobacterium noricense

Strain Designation: A1

Strain history: NCIMB 13967 <-- H. Stan-Lotter A1.

NCBI tax ID(s): 223182 (species)

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General

@ref: 6223

BacDive-ID: 5915

DSM-Number: 15987

keywords: genome sequence, 16S sequence, Archaea, mesophilic

description: Halobacterium noricense A1 is a mesophilic archaeon that was isolated from bore core of an alpine Permian salt deposit.

NCBI tax id

  • NCBI tax id: 223182
  • Matching level: species

strain history

@refhistory
6223<- H. Stan-Lotter, Univ. Salzburg, Inst. Genetics; A1 <- H. Stan-Lotter and C. Gruber
67770NCIMB 13967 <-- H. Stan-Lotter A1.

doi: 10.13145/bacdive5915.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Halobacteria
  • order: Halobacteriales
  • family: Halobacteriaceae
  • genus: Halobacterium
  • species: Halobacterium noricense
  • full scientific name: Halobacterium noricense Gruber et al. 2005

@ref: 6223

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Halobacteriales

family: Halobacteriaceae

genus: Halobacterium

species: Halobacterium noricense

full scientific name: Halobacterium noricense Gruber et al. 2005

strain designation: A1

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 6223
  • name: HALOBACTERIA MEDIUM (DSMZ Medium 372)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/372
  • composition: Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
6223positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-8, MK-8(H2)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6223bore core of an alpine Permian salt depositAltauseeAustriaAUTEurope
67770Bore core sample of Permian rock salt from the salt mine in AltausseeAustriaAUTEurope

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Geologic
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_187136.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17654;96_68807;97_89449;98_121733;99_187136&stattab=map
  • Last taxonomy: Halobacterium
  • 16S sequence: AJ548827
  • Sequence Identity:
  • Total samples: 155
  • soil counts: 18
  • aquatic counts: 126
  • animal counts: 9
  • plant counts: 2

Safety information

risk assessment

  • @ref: 6223
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6223
  • description: Halobacterium sp. A1 partial 16S rRNA gene
  • accession: AJ548827
  • length: 1473
  • database: ena
  • NCBI tax ID: 223182

Genome sequences

  • @ref: 66792
  • description: Halobacterium noricense JCM 15102
  • accession: GCA_021233435
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 223182

GC content

  • @ref: 67770
  • GC-content: 54.5
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno95.958no
gram-positiveno97.227no
anaerobicno93.566no
aerobicyes78.794no
halophileyes88.494no
spore-formingno95.814no
motileno77.311no
thermophileno86.52yes
glucose-utilyes87.513no
glucose-fermentno78.252no

External links

@ref: 6223

culture collection no.: DSM 15987, ATCC BAA 852, NCIMB 13967, JCM 15102

straininfo link

  • @ref: 75396
  • straininfo: 138985

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15290323Halobacterium noricense sp. nov., an archaeal isolate from a bore core of an alpine Permian salt deposit, classification of Halobacterium sp. NRC-1 as a strain of H. salinarum and emended description of H. salinarum.Gruber C, Legat A, Pfaffenhuemer M, Radax C, Weidler G, Busse HJ, Stan-Lotter HExtremophiles10.1007/s00792-004-0403-62004Archaeal Proteins/isolation & purification, Austria, Base Composition, Carotenoids/analysis, DNA, Archaeal/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, Archaeal, Geologic Sediments/*microbiology, Halobacterium/chemistry/classification/genetics/*isolation & purification, Halobacterium salinarum/*classification/genetics, Lipids/analysis/chemistry, Microscopy, Electron, Scanning, Phylogeny, Plasmids/genetics, RNA, Archaeal/genetics, RNA, Ribosomal, 16S/genetics, Sodium Chloride, Species Specificity, Terminology as Topic, Vitamin K 2/analysisEnzymology
Phylogeny22058320Halobacterium piscisalsi Yachai et al. 2008 is a later heterotypic synonym of Halobacterium salinarum Elazari-Volcani 1957.Minegishi H, Echigo A, Shimane Y, Kamekura M, Tanasupawat S, Visessanguan W, Usami RInt J Syst Evol Microbiol10.1099/ijs.0.036905-02011DNA, Archaeal/genetics, DNA-Directed RNA Polymerases/genetics, *Food Microbiology, Halobacterium/*classification/genetics/isolation & purification, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, ThailandBiotechnology
Phylogeny25112838Halobacterium rubrum sp. nov., isolated from a marine solar saltern.Han D, Cui HLArch Microbiol10.1007/s00203-014-1023-x2014Base Composition, China, DNA, Archaeal/genetics, Glycolipids/analysis, Halobacterium/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Lipids/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, *Sodium ChlorideEnzymology
Phylogeny28901903Halobacterium litoreum sp. nov., isolated from a marine solar saltern.Lu ZZ, Li Y, Zhou Y, Cui HL, Li ZRInt J Syst Evol Microbiol10.1099/ijsem.0.0022592017Base Composition, China, DNA, Archaeal/genetics, Genes, Archaeal, Glycolipids/analysis, Halobacterium/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Salinity, Sequence Analysis, DNA, *Water MicrobiologyTranscriptome
Phylogeny29329319Comparative analysis of uranium bioassociation with halophilic bacteria and archaea.Bader M, Muller K, Foerstendorf H, Schmidt M, Simmons K, Swanson JS, Reed DT, Stumpf T, Cherkouk APLoS One10.1371/journal.pone.01909532018Bacteria/classification/growth & development/*metabolism, Halobacterium/classification/growth & development/*metabolism, Microscopy, Electron, Scanning, Phylogeny, Radioactive Waste, Spectrometry, X-Ray Emission, Spectroscopy, Fourier Transform Infrared, Uranium/*metabolismMetabolism
30125086Impact of Haloarchaea on Speciation of Uranium-A Multispectroscopic Approach.Bader M, Rossberg A, Steudtner R, Drobot B, Grossmann K, Schmidt M, Musat N, Stumpf T, Ikeda-Ohno A, Cherkouk AEnviron Sci Technol10.1021/acs.est.8b026672018Archaea, Biodegradation, Environmental, *Radioactive Waste, *Uranium, X-Ray Absorption Spectroscopy
Metabolism30721439Association of Eu(III) and Cm(III) onto an extremely halophilic archaeon.Bader M, Moll H, Steudtner R, Losch H, Drobot B, Stumpf T, Cherkouk AEnviron Sci Pollut Res Int10.1007/s11356-019-04165-72019Archaea/metabolism/*physiology, Curium/*metabolism, Europium/chemistry/*metabolism, Lasers, *Radioactive Waste, Salt Tolerance, Spectrometry, Fluorescence/methods

Reference

@idauthorscataloguedoi/urltitle
6223Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15987)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15987
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75396Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID138985.1StrainInfo: A central database for resolving microbial strain identifiers