Name: Glycomyces algeriensis LLR-39Z-86
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5840

Type strain:

Species: Glycomyces algeriensis

Strain Designation: LLR-39Z-86

Culture col. no.: DSM 44727, JCM 14910, NRRL B-16327, NBRC 103888

Strain history: DSM 44727 <-- NRRL B-16327 <-- M. P. Lechevalier LLR-39Z-86.

NCBI tax ID(s): 256037 (species)

SI-ID 132659

NRRL B-16327, DSM 44727, NBRC 103888, JCM 14910

Special Collections

Section

Glycomyces algeriensis LLR-39Z-86 is an aerobe, spore-forming, Gram-positive bacterium that builds an aerial mycelium and was isolated from potato field soil.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Glycomycetales*
	Family	*Glycomycetaceae*
	Genus	*Glycomyces*
	Species	**Glycomyces algeriensis**
	Full Scientific Name (LPSN)	Glycomyces algeriensis Labeda and Kroppenstedt 2004

Information on morphological and physiological properties Morphology

[Ref.: #31227]	Gram stain	positive

[Ref.: #31227]	Cell length	0.375 µm

[Ref.: #20106]	Colony color	Beige (1001)
[Ref.: #20106]	Incubation period	10-14 days
[Ref.: #20106]	Cultivation medium used	ISP 2

[Ref.: #20106]	Colony color	Beige (1001)
[Ref.: #20106]	Incubation period	10-14 days
[Ref.: #20106]	Cultivation medium used	ISP 3

[Ref.: #20106]	Colony color	Beige (1001)
[Ref.: #20106]	Incubation period	10-14 days
[Ref.: #20106]	Cultivation medium used	ISP 4

[Ref.: #20106]	Colony color	Beige (1001)
[Ref.: #20106]	Incubation period	10-14 days
[Ref.: #20106]	Cultivation medium used	ISP 5

[Ref.: #20106]	Colony color	Beige (1001)
[Ref.: #20106]	Incubation period	10-14 days
[Ref.: #20106]	Cultivation medium used	ISP 6

[Ref.: #20106]	Colony color	Beige (1001)
[Ref.: #20106]	Incubation period	10-14 days
[Ref.: #20106]	Cultivation medium used	ISP 7

[Ref.: #31227]

Pigment production

[Ref.: #20106]	Multicellular complex forming ability	no
[Ref.: #20106]	Medium Name (multicellularity)	ISP 2

[Ref.: #20106]	Multicellular complex forming ability	yes
[Ref.: #20106]	Multicellular complex name	Aerial Mycelium
[Ref.: #20106]	Multicellular complex color	White
[Ref.: #20106]	Medium Name (multicellularity)	ISP 3

[Ref.: #20106]	Multicellular complex forming ability	no
[Ref.: #20106]	Medium Name (multicellularity)	ISP 4

[Ref.: #20106]	Multicellular complex forming ability	no
[Ref.: #20106]	Medium Name (multicellularity)	ISP 5

[Ref.: #20106]	Multicellular complex forming ability	no
[Ref.: #20106]	Medium Name (multicellularity)	ISP 6

[Ref.: #20106]	Multicellular complex forming ability	no
[Ref.: #20106]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12045]

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #12045]

Culture medium growth

[Ref.: #12045]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12045]

Culture medium composition

expand / minimize

[Ref.: #20106]

Culture medium

ISP 2

[Ref.: #20106]

Culture medium growth

[Ref.: #20106]

Culture medium composition

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[Ref.: #20106]

Culture medium

ISP 3

[Ref.: #20106]

Culture medium growth

[Ref.: #20106]

Culture medium composition

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[Ref.: #20106]

Culture medium

ISP 4

[Ref.: #20106]

Culture medium growth

[Ref.: #20106]

Culture medium composition

expand / minimize

[Ref.: #20106]

Culture medium

ISP 5

[Ref.: #20106]

Culture medium growth

[Ref.: #20106]

Culture medium composition

expand / minimize

[Ref.: #20106]

Culture medium

ISP 6

[Ref.: #20106]

Culture medium growth

[Ref.: #20106]

Culture medium composition

expand / minimize

[Ref.: #20106]

Culture medium

ISP 7

[Ref.: #20106]

Culture medium growth

[Ref.: #20106]

Culture medium composition

expand / minimize

[Ref.: #12045]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #12045]

Culture medium growth

[Ref.: #12045]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12045]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #12045]	growth	28 °C
[Ref.: #20106]	optimum	28 °C
[Ref.: #31227]	growth	15-37 °C
[Ref.: #31227]	optimum	26 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31227]

Oxygen tolerance

aerobe

[Ref.: #31227]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31227]		NaCl		optimum	5	%

[Ref.: #67770]

Observation

quinones: MK-10, MK-11, MK-12

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31227]	acetate ChEBI	+	carbon source
[Ref.: #20106]	arabinose ChEBI	+
[Ref.: #31227]	arabinose ChEBI	+	carbon source
[Ref.: #31227]	cellobiose ChEBI	+	carbon source
[Ref.: #20106]	cellulose ChEBI	+
[Ref.: #31227]	dextrin ChEBI	+	carbon source
[Ref.: #20106]	fructose ChEBI	+
[Ref.: #31227]	fructose ChEBI	+	carbon source
[Ref.: #31227]	galactose ChEBI	+	carbon source
[Ref.: #20106]	glucose ChEBI	+
[Ref.: #31227]	glucose ChEBI	+	carbon source
[Ref.: #31227]	glycerol ChEBI	+	carbon source
[Ref.: #31227]	lactose ChEBI	+	carbon source
[Ref.: #31227]	malate ChEBI	+	carbon source
[Ref.: #31227]	maltose ChEBI	+	carbon source
[Ref.: #20106]	mannitol ChEBI	+
[Ref.: #31227]	mannose ChEBI	+	carbon source
[Ref.: #20106]	myo-inositol ChEBI	+
[Ref.: #31227]	myo-inositol ChEBI	+	carbon source
[Ref.: #31227]	nitrate ChEBI	+	reduction
[Ref.: #31227]	propionate ChEBI	+	carbon source
[Ref.: #20106]	raffinose ChEBI	+
[Ref.: #20106]	rhamnose ChEBI	+
[Ref.: #31227]	rhamnose ChEBI	+	carbon source
[Ref.: #31227]	salicin ChEBI	+	carbon source
[Ref.: #20106]	sucrose ChEBI	+
[Ref.: #20106]	xylose ChEBI	+
[Ref.: #31227]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31227]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #20106]	887	not determinedn.d.	+	+	+	-	-	-	-	+	-	+	-	+	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12045]	Sample type/isolated from	potato field soil
[Ref.: #12045]	Country	Algeria
[Ref.: #12045]	Country ISO 3 Code	DZA
[Ref.: #12045]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Soil in a potato field
[Ref.: #67770]	Geographic location (country and/or sea, region)	Oran
[Ref.: #67770]	Country	Algeria
[Ref.: #67770]	Country ISO 3 Code	DZA
[Ref.: #67770]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12045]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #20106]	Biosafety level	1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31227]	Glycomyces algeriensis 16S ribosomal RNA gene, partial sequence	AY462044	1495	GenBank ENA	256037 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Glycomyces algeriensis DSM 44727	2923461097	draft	JGI IMG/M	256037 tax ID	*
[Ref.: #66792]	Glycomyces algeriensis DSM 44727	GCA_027622855	scaffold	GenBank ENA	256037 tax ID	*

Availability in culture collections External links

[Ref.: #12045]

Culture collection no.

DSM 44727, JCM 14910, NRRL B-16327, NBRC 103888

[Ref.: #75321]

SI-ID 132659

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Glycomyces luteolus sp. nov., a novel actinomycete isolated from rhizosphere soil of wheat (Triticum aestivum L.).	Duan L, Song W, Jiang S, Qian L, Guo X, Wang X, Zhao J, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-018-1200-z	2018	*
Phylogeny	Glycomyces tritici sp. nov., isolated from rhizosphere soil of wheat (Triticum aestivum L.) and emended description of the genus Glycomyces.	Li W, Liu C, Guo X, Song W, Sun T, Duan L, Wang X, Zhao J, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-017-1011-7	2017	*
Phylogeny	Glycomyces artemisiae sp. nov., an endophytic actinomycete isolated from the roots of Artemisia argyi.	Zhang X, Ren K, Du J, Liu H, Zhang L	Int J Syst Evol Microbiol	10.1099/ijs.0.063388-0	2014	*
Phylogeny	Glycomyces endophyticus sp. nov., an endophytic actinomycete isolated from the root of Carex baccans Nees.	Qin S, Wang HB, Chen HH, Zhang YQ, Jiang CL, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/000398-0	2008	*
Phylogeny	Emended description of the genus Glycomyces and description of Glycomyces algeriensis sp. nov., Glycomyces arizonensis sp. nov. and Glycomyces lechevalierae sp. nov.	Labeda DP, Kroppenstedt RM	Int J Syst Evol Microbiol	10.1099/ijs.0.63089-0	2004	*

References

#12045

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44727

#20106

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31227

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27553 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#75321

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID132659.1 )

#27553

IJSEM 2343 2004 ( DOI 10.1099/ijs.0.63089-0 , PubMed 15545481 )

* These data were automatically processed and therefore are not curated

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