Name: Glycomyces tenuis DSM 44171
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5836

Type strain:

Species: Glycomyces tenuis

Culture col. no.: DSM 44171, ATCC 49849, IFO 15904, INA n-5888, JCM 9087, NBRC 15904, VKM Ac-1250, BCRC 16362, IMSNU 22075, KCTC 9658, NRRL B-16895

Strain history: VKM Ac-1250 <-- L. P. Terekhova n-5888.

NCBI tax ID(s): 1111731 (strain), 58116 (species)

SI-ID 265429

ATCC 49849, VKM Ac-1250, DSM 44171, IFO 15904, JCM 9087, KCTC 9658, NBRC 15904, NRRL B-16895, BCRC 16362, CCRC 16362

Special Collections

Section

Glycomyces tenuis DSM 44171 is a Gram-positive bacterium that was isolated from soil, isolated from an association with Streptomyces galilaeus, INA 5888.

Gram-positive
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Glycomycetales*
	Family	*Glycomycetaceae*
	Genus	*Glycomyces*
	Species	**Glycomyces tenuis**
	Full Scientific Name (LPSN)	Glycomyces tenuis Evtushenko et al. 1991

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %92.927

[Ref.: #69480]	Motility	no Confidence in %95.975

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

[Ref.: #38140]

Culture medium

MEDIUM 11 - for Agromyces

[Ref.: #38140]

Culture medium growth

[Ref.: #38140]

Culture medium composition

expand / minimize

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Culture medium

CZAPEK PEPTONE AGAR (DSMZ Medium 83)

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Culture medium growth

[Ref.: #11569]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11569]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #11569]	growth	28 °C
[Ref.: #38140]	growth	30 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

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Observation

quinones: MK-9(H₆), MK-10(H₆), MK-11(H₆)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11569]	Sample type/isolated from	soil, isolated from an association with Streptomyces galilaeus, INA 5888
[Ref.: #11569]	Host species	Streptomyces galilaeus

[Ref.: #67770]	Sample type/isolated from	Platings of Streptomyces galilaeus INA 5888
[Ref.: #67770]	Host species	Streptomyces galilaeus
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Microbial	#Bacteria

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC062609 (>99% sequence identity) for Glycomyces tenuis subclade from Microbeatlas

Aquatic Samples	7
Soil Samples	17
Animal Samples	69
Plant Samples	8
Total Samples	101

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Glycomyces tenuis gene for 16S ribosomal RNA, partial sequence, strain: JCM 9087	LC062609	1457	GenBank ENA	58116 tax ID
[Ref.: #20218]	Glycomyces tenuis gene for 16S ribosomal RNA, partial sequence	D85482	1489	GenBank ENA	1111731 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Glycomyces tenuis DSM 44171	GCA_000427885	scaffold	GenBank ENA	1111731 tax ID
[Ref.: #67770]	Glycomyces tenuis NRRL B-16895	GCA_000715885	scaffold	GenBank ENA	58116 tax ID
[Ref.: #66792]	Glycomyces tenuis DSM 44171	1111731.3	wgs	PATRIC	1111731 tax ID	*
[Ref.: #66792]	Glycomyces tenuis DSM 44171	2513237120	draft	JGI IMG/M	1111731 tax ID	*

[Ref.: #11569]	GC-content	72 mol%
[Ref.: #67770]	GC-content	70.4 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	72 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Glycomyces tenuis DSM 44171 PATRIC: 1111731.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.927	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.766	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	82.226	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.633	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.719	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	95.975	no

Availability in culture collections External links

[Ref.: #11569]

Culture collection no.

DSM 44171, ATCC 49849, IFO 15904, INA n-5888, JCM 9087, NBRC 15904, VKM Ac-1250, BCRC 16362, IMSNU 22075, KCTC 9658, NRRL B-16895

[Ref.: #75318]

SI-ID 265429

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Glycomyces phytohabitans sp. nov., a novel endophytic actinomycete isolated from the coastal halophyte in Jiangsu, East China.	Xing K, Qin S, Zhang WD, Cao CL, Ruan JS, Huang Y, Jiang JH	J Antibiot (Tokyo)	10.1038/ja.2014.40	2014	*
	Erythritolteichoic acid in the cell wall of Glycomyces tenuis VKM Ac-1250.	Potekhina NV, Tul'skaya EM, Naumova IB, Shashkov AS, Evtushenko LI	Eur J Biochem	10.1111/j.1432-1033.1993.tb18386.x	1993	*

References

#11569

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44171

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38140 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75318

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID265429.1 )

* These data were automatically processed and therefore are not curated

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