Name: Glycomyces tenuis DSM 44171
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5836

Type strain:

Species: Glycomyces tenuis

Culture col. no.: DSM 44171, ATCC 49849, IFO 15904, INA n-5888, JCM 9087, NBRC 15904, VKM Ac-1250, BCRC 16362, IMSNU 22075, KCTC 9658, NRRL B-16895

Strain history: VKM Ac-1250 <-- L. P. Terekhova n-5888.

NCBI tax ID(s): 1111731 (strain), 58116 (species)

SI-ID 265429

ATCC 49849, VKM Ac-1250, DSM 44171, IFO 15904, JCM 9087, KCTC 9658, NBRC 15904, NRRL B-16895, BCRC 16362, CCRC 16362

Section

Glycomyces tenuis DSM 44171 is a mesophilic bacterium that was isolated from soil, isolated from an association with Streptomyces galilaeus, INA 5888.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Glycomycetales*
	Family	*Glycomycetaceae*
	Genus	*Glycomyces*
	Species	**Glycomyces tenuis**
	Full Scientific Name (LPSN)	Glycomyces tenuis Evtushenko et al. 1991

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

[Ref.: #38140]

Culture medium

MEDIUM 11 - for Agromyces

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Culture medium growth

[Ref.: #38140]

Culture medium composition

expand / minimize

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Culture medium

CZAPEK PEPTONE AGAR (DSMZ Medium 83)

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Culture medium growth

[Ref.: #11569]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11569]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #11569]	growth	28 °C
[Ref.: #38140]	growth	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #11569]	Temperature range	mesophilic
[Ref.: #38140]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

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Observation

quinones: MK-9(H₆), MK-10(H₆), MK-11(H₆)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11569]	Sample type/isolated from	soil, isolated from an association with Streptomyces galilaeus, INA 5888
[Ref.: #11569]	Host species	Streptomyces galilaeus

[Ref.: #67770]	Sample type/isolated from	Platings of Streptomyces galilaeus INA 5888
[Ref.: #67770]	Host species	Streptomyces galilaeus
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Microbial	#Bacteria

What are isolation sources categories?

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Global distribution of 16S sequence LC062609 (>99% sequence identity) for Glycomyces tenuis subclade from Microbeatlas

Aquatic Samples	7
Soil Samples	17
Animal Samples	69
Plant Samples	8
Total Samples	101

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Glycomyces tenuis gene for 16S ribosomal RNA, partial sequence, strain: JCM 9087	LC062609	1457	ENA	58116 tax ID
[Ref.: #20218]	Glycomyces tenuis gene for 16S ribosomal RNA, partial sequence	D85482	1489	ENA	1111731 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Glycomyces tenuis DSM 44171	GCA_000427885	scaffold	GenBank	1111731 tax ID
[Ref.: #67770]	Glycomyces tenuis NRRL B-16895	GCA_000715885	scaffold	GenBank	58116 tax ID
[Ref.: #66792]	Glycomyces tenuis DSM 44171	1111731.3	wgs	PATRIC	1111731 tax ID	*
[Ref.: #66792]	Glycomyces tenuis DSM 44171	2513237120	draft	JGI IMG/M	1111731 tax ID	*

[Ref.: #11569]	GC-content	72 mol%
[Ref.: #67770]	GC-content	70.4 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	72 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Glycomyces tenuis DSM 44171 PATRIC: 1111731.3
[Ref.: #69480]	motile	no	91.743	no
[Ref.: #69480]	flagellated	no	97.104	no
[Ref.: #69480]	gram-positive	yes	92.18	no
[Ref.: #69480]	anaerobic	no	98.508	no
[Ref.: #69480]	aerobic	yes	91.156	no
[Ref.: #69480]	halophile	no	66.862	no
[Ref.: #69480]	spore-forming	yes	89.881	no
[Ref.: #69480]	thermophile	no	94.622	yes
[Ref.: #69480]	glucose-util	yes	85.399	no
[Ref.: #69480]	glucose-ferment	no	83.508	no

Availability in culture collections External links

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Culture collection no.

DSM 44171, ATCC 49849, IFO 15904, INA n-5888, JCM 9087, NBRC 15904, VKM Ac-1250, BCRC 16362, IMSNU 22075, KCTC 9658, NRRL B-16895

[Ref.: #75318]

SI-ID 265429

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Glycomyces phytohabitans sp. nov., a novel endophytic actinomycete isolated from the coastal halophyte in Jiangsu, East China.	Xing K, Qin S, Zhang WD, Cao CL, Ruan JS, Huang Y, Jiang JH	J Antibiot (Tokyo)	10.1038/ja.2014.40	2014	*
	Erythritolteichoic acid in the cell wall of Glycomyces tenuis VKM Ac-1250.	Potekhina NV, Tul'skaya EM, Naumova IB, Shashkov AS, Evtushenko LI	Eur J Biochem	10.1111/j.1432-1033.1993.tb18386.x	1993	*

References

#11569

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44171

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38140 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75318

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID265429.1 )

* These data were automatically processed and therefore are not curated

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