Strain identifier

BacDive ID: 5836

Type strain: Yes

Species: Glycomyces tenuis

Strain history: VKM Ac-1250 <-- L. P. Terekhova n-5888.

NCBI tax ID(s): 1111731 (strain), 58116 (species)

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General

@ref: 11569

BacDive-ID: 5836

DSM-Number: 44171

keywords: genome sequence, 16S sequence, Bacteria, Gram-positive

description: Glycomyces tenuis DSM 44171 is a Gram-positive bacterium that was isolated from soil, isolated from an association with Streptomyces galilaeus, INA 5888.

NCBI tax id

NCBI tax idMatching level
1111731strain
58116species

strain history

@refhistory
11569<- L. V. Kalakoutskii, VKM <- L. Terekhova, INA
67770VKM Ac-1250 <-- L. P. Terekhova n-5888.

doi: 10.13145/bacdive5836.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Glycomycetales
  • family: Glycomycetaceae
  • genus: Glycomyces
  • species: Glycomyces tenuis
  • full scientific name: Glycomyces tenuis Evtushenko et al. 1991

@ref: 11569

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Glycomycetaceae

genus: Glycomyces

species: Glycomyces tenuis

full scientific name: Glycomyces tenuis Evtushenko et al. 1991 emend. Nouioui et al. 2018

type strain: yes

Morphology

cell morphology

@refgram stainconfidencemotility
69480positive92.927
6948095.975no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11569GPHF-MEDIUM (DSMZ Medium 553)yeshttps://mediadive.dsmz.de/medium/553Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
38140MEDIUM 11 - for AgromycesyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (5.000g);Yeast extract (3.000 g);Peptone (5.000 g);Di Potassium monohydrogenophosphate (0.200 g)
11569CZAPEK PEPTONE AGAR (DSMZ Medium 83)yeshttps://mediadive.dsmz.de/medium/83Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water

culture temp

@refgrowthtypetemperature
11569positivegrowth28
38140positivegrowth30
67770positivegrowth28

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H6), MK-10(H6), MK-11(H6)

Isolation, sampling and environmental information

isolation

@refsample typehost species
11569soil, isolated from an association with Streptomyces galilaeus, INA 5888Streptomyces galilaeus
67770Platings of Streptomyces galilaeus INA 5888Streptomyces galilaeus

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Microbial#Bacteria

taxonmaps

  • @ref: 69479
  • File name: preview.99_2719.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_344;96_1445;97_1724;98_2109;99_2719&stattab=map
  • Last taxonomy: Glycomyces tenuis subclade
  • 16S sequence: LC062609
  • Sequence Identity:
  • Total samples: 101
  • soil counts: 17
  • aquatic counts: 7
  • animal counts: 69
  • plant counts: 8

Safety information

risk assessment

  • @ref: 11569
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Glycomyces tenuis gene for 16S ribosomal RNA, partial sequenceD854821489nuccore1111731
67770Glycomyces tenuis gene for 16S ribosomal RNA, partial sequence, strain: JCM 9087LC0626091457nuccore58116

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Glycomyces tenuis DSM 441711111731.3wgspatric1111731
66792Glycomyces tenuis DSM 441712513237120draftimg1111731
67770Glycomyces tenuis DSM 44171GCA_000427885scaffoldncbi1111731
67770Glycomyces tenuis NRRL B-16895GCA_000715885scaffoldncbi58116

GC content

@refGC-contentmethod
1156972
6777070.4genome sequence analysis
6777072thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingyes92.927no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no95.766no
69480spore-formingspore-formingAbility to form endo- or exosporesyes82.226no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes85.633no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno94.719yes
69480flagellatedmotile2+Ability to perform flagellated movementno95.975no

External links

@ref: 11569

culture collection no.: DSM 44171, ATCC 49849, IFO 15904, INA n-5888, JCM 9087, NBRC 15904, VKM Ac-1250, BCRC 16362, IMSNU 22075, KCTC 9658, NRRL B-16895

straininfo link

  • @ref: 75318
  • straininfo: 265429

literature

Pubmed-IDtitleauthorsjournalDOIyearmeshtopictopic2
8269925Erythritolteichoic acid in the cell wall of Glycomyces tenuis VKM Ac-1250.Potekhina NV, Tul'skaya EM, Naumova IB, Shashkov AS, Evtushenko LIEur J Biochem10.1111/j.1432-1033.1993.tb18386.x1993Actinomycetales/*chemistry, Cell Wall/*chemistry, Glycosides/chemistry, Hydrogen-Ion Concentration, Hydrolysis, Magnetic Resonance Spectroscopy, Organophosphorus Compounds/chemistry, Teichoic Acids/*chemistry
24736858Glycomyces phytohabitans sp. nov., a novel endophytic actinomycete isolated from the coastal halophyte in Jiangsu, East China.Xing K, Qin S, Zhang WD, Cao CL, Ruan JS, Huang Y, Jiang JHJ Antibiot (Tokyo)10.1038/ja.2014.402014Actinobacteria/classification/*genetics/*isolation & purification, Asteraceae/*microbiology, China, Phylogeny, RNA, Bacterial/*genetics, RNA, Ribosomal, 16S/genetics, Salt-Tolerant Plants/*microbiologyPhylogenyEnzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11569Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44171)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44171
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38140Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15454
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
75318Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID265429.1StrainInfo: A central database for resolving microbial strain identifiers